RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TMEM212A6NML5 194 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 M0R036 132 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 C1QAP02745 245 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 UBBP0CG47 229 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 FAM236CP0DP71 79 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BOP23527 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BBP33778 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BDP58876 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BCP62807 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST2H2BEQ16778 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.07□□□□□ -2.24
VPS41-207ENST00000439468 BPIFA4PQ86YQ2 179 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 CLVS1Q8IUQ0 354 aaPredicted RBP1.07□□□□□ -2.24
VPS41-207ENST00000439468 ANKRD29Q8N6D5 301 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 CLDN22Q8N7P3 220 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 OR8B3Q8NGG8 313 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BHQ93079 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BNQ99877 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H2BMQ99879 126 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 LHFPL6Q9Y693 200 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 DNAH5Q8TE73 4624 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 FAT3Q8TDW7 4589 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 SYNE2Q8WXH0 6885 aaKnown RBP1.07□□□□□ -2.24
VPS41-207ENST00000439468 SSPOA2VEC9 5147 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 IGKV1D-42A0A075B6H8 117 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 SDCBPO00560 298 aaPredicted RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 PMP2P02689 132 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 RPSAP08865 295 aaKnown RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 CRYGAP11844 174 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 ZNF80P51504 273 aaPredicted RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 LSM6P62312 80 aaKnown RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 UBA52P62987 128 aaKnown RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 ZNF345Q14585 488 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 CDK5R1Q15078 307 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 ELOBQ15370 118 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 ACOT6Q3I5F7 207 aaPredicted RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 LPCAT3Q6P1A2 487 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 DCXRQ7Z4W1 244 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 DHFR2Q86XF0 187 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 TRAPPC5Q8IUR0 188 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 WFDC5Q8TCV5 224 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 PATE1Q8WXA2 126 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 PPP1R14BQ96C90 147 aa1.06□□□□□ -2.24
VPS41-207ENST00000439468 ADAT1Q9BUB4 502 aaKnown RBP1.06□□□□□ -2.24
VPS41-207ENST00000439468 MEIKINA0A087WXM9 373 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 IRGMA1A4Y4 181 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 TRAPPC13A5PLN9 417 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 DEFB108AA8MXU0 73 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 HCRTO43612 131 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 CNIH1O95406 144 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 KRTAP10-4P60372 401 aaPredicted RBP1.05□□□□□ -2.24
VPS41-207ENST00000439468 RANP62826 216 aaKnown RBP1.05□□□□□ -2.24
VPS41-207ENST00000439468 AESQ08117 197 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 SURF2Q15527 256 aaPredicted RBP1.05□□□□□ -2.24
VPS41-207ENST00000439468 IBA57Q5T440 356 aaKnown RBP1.05□□□□□ -2.24
VPS41-207ENST00000439468 Q8N2B8 174 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 LRRC25Q8N386 305 aaPredicted RBP1.05□□□□□ -2.24
VPS41-207ENST00000439468 OR52R1Q8NGF1 315 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 CCL4L1Q8NHW4 92 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 DNAJC9Q8WXX5 260 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 PRTFDC1Q9NRG1 225 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 MRPL27Q9P0M9 148 aaKnown RBP1.05□□□□□ -2.24
VPS41-207ENST00000439468 VPS29Q9UBQ0 182 aa1.05□□□□□ -2.24
VPS41-207ENST00000439468 TNXBP22105 4242 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 TRAV17A0A0B4J275 112 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 EXOC1LA0A1B0GW35 172 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 DPRXA6NFQ7 191 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 OR4C46A6NHA9 309 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 BUB1B-PAK6H3BSN5 160 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 KLF7O75840 302 aaPredicted RBP1.04□□□□□ -2.24
VPS41-207ENST00000439468 TCRBP04435 133 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 FKBP2P26885 142 aaKnown RBP1.04□□□□□ -2.24
VPS41-207ENST00000439468 ASIPP42127 132 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 FXYD2P54710 66 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 PSME3P61289 254 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 ZNF846Q147U1 533 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 NDUFA5Q16718 116 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 KRTAP20-1Q3LI63 56 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 SPOPLQ6IQ16 392 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 RPL22L1Q6P5R6 122 aaKnown RBP1.04□□□□□ -2.24
VPS41-207ENST00000439468 LCN15Q6UWW0 184 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 GKN2Q86XP6 184 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 C20orf196Q8IYI0 205 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 TERB2Q8NHR7 220 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 MCFD2Q8NI22 146 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 RASSF5Q8WWW0 418 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 H1FXQ92522 213 aaKnown RBP1.04□□□□□ -2.24
VPS41-207ENST00000439468 TMEM106AQ96A25 262 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 TSPAN32Q96QS1 320 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 NIPSNAP1Q9BPW8 284 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 TMEM147Q9BVK8 224 aa1.04□□□□□ -2.24
VPS41-207ENST00000439468 NEBP20929 6669 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 DOCK11Q5JSL3 2073 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 SNRNP200O75643 2136 aaKnown RBP1.03□□□□□ -2.24
VPS41-207ENST00000439468 MED12LQ86YW9 2145 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 TRAV26-2A0A0B4J265 109 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 SMIM9A6NGZ8 99 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 SMIM23A6NLE4 172 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 KPNA3O00505 521 aaPredicted RBP1.03□□□□□ -2.24
VPS41-207ENST00000439468 CRYZL1O95825 349 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms