RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZNF833PQ6ZTB9 187 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 LINC00311Q8N616 119 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 C11orf52Q96A22 123 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 V9GYV3 84 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 WT1-ASQ06250 92 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 C17orf58Q2M2W7 97 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 PRIMA1Q86XR5 153 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 TIMM21Q9BVV7 248 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 INSP01308 110 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 IGLV3-1P01715 115 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 CST9LQ9H4G1 147 aa9.17□□□□□ -0.94
PTPRF-203ENST00000372407 GNLYP22749 145 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 LOXP28300 417 aaPredicted RBP9.16□□□□□ -0.94
PTPRF-203ENST00000372407 NSUN5P1Q3KNT7 163 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 OCIAD2Q56VL3 154 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 C2orf66Q6UXQ4 117 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 HAPLN4Q86UW8 402 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 TRAV13-1A0A0B4J241 112 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 ATP6V0E1O15342 81 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 IGHV3-53P01767 116 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 SPXQ9BT56 116 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 GTSF1LQ9H1H1 148 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 WIPF3A6NGB9 483 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 C15orf65H3BRN8 121 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 LGALS1P09382 135 aaKnown RBP9.16□□□□□ -0.94
PTPRF-203ENST00000372407 LCNL1Q6ZST4 164 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 ZNF114Q8NC26 417 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 ALPK3Q96L96 1907 aa9.16□□□□□ -0.94
PTPRF-203ENST00000372407 ZNF503-AS2A6NEH8 195 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 NDUFS8O00217 210 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 SLC25A16P16260 332 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 SYNJ2BPP57105 145 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 SLAQ13239 276 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 UBE2E2Q96LR5 201 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 PRR25Q96S07 402 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 PTPN13Q12923 2485 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 KIF26AQ9ULI4 1882 aaPredicted RBP9.15□□□□□ -0.94
PTPRF-203ENST00000372407 RHODO00212 210 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 IGHV2-70P01814 119 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 DEFB131AP59861 70 aa9.15□□□□□ -0.94
PTPRF-203ENST00000372407 TRPT1Q86TN4 253 aaKnown RBP9.15□□□□□ -0.94
PTPRF-203ENST00000372407 HELZP42694 1942 aaKnown RBP9.15□□□□□ -0.94
PTPRF-203ENST00000372407 IGLV1-44P01699 117 aa9.15□□□□□ -0.95
PTPRF-203ENST00000372407 POU2AF1Q16633 256 aa9.15□□□□□ -0.95
PTPRF-203ENST00000372407 IL17RELQ6ZVW7 336 aa9.15□□□□□ -0.95
PTPRF-203ENST00000372407 Q6ZWC4 215 aa9.15□□□□□ -0.95
PTPRF-203ENST00000372407 KLHL30-AS1Q8NEE0 82 aa9.15□□□□□ -0.95
PTPRF-203ENST00000372407 Q8NFD4 153 aa9.15□□□□□ -0.95
PTPRF-203ENST00000372407 SPAG8Q99932 426 aaPredicted RBP9.15□□□□□ -0.95
PTPRF-203ENST00000372407 IGLV3-9A0A075B6K5 115 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 CEACAM8P31997 349 aaPredicted RBP9.14□□□□□ -0.95
PTPRF-203ENST00000372407 PHLDA1Q8WV24 401 aaPredicted RBP9.14□□□□□ -0.95
PTPRF-203ENST00000372407 C11orf68Q9H3H3 251 aaKnown RBP9.14□□□□□ -0.95
PTPRF-203ENST00000372407 IGFL3Q6UXB1 125 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 NEGR1Q7Z3B1 354 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 Q8N8P6 123 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 VGLL1Q99990 258 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 TMEM14CQ9P0S9 112 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 MYLKQ15746 1914 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 ZNF134P52741 427 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 DUX4L9Q6RFH8 374 aaPredicted RBP9.14□□□□□ -0.95
PTPRF-203ENST00000372407 ADAMTSL5Q6ZMM2 481 aa9.14□□□□□ -0.95
PTPRF-203ENST00000372407 C9JAW5 83 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 SSBP2P81877 361 aaPredicted RBP9.13□□□□□ -0.95
PTPRF-203ENST00000372407 TEX36Q5VZQ5 186 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 G3V318 75 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 PRR20EP86478 221 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 PRR20CP86479 221 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 PRR20DP86480 221 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 PRR20BP86481 221 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 PRR20AP86496 221 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 PRSS57Q6UWY2 283 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 TP53TG1Q9Y2A0 90 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 SMIM27A0A1W2PRY6 76 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 LEPROTO15243 131 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 MMP23AO75900 390 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 DKK1O94907 266 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 IGLL1P15814 213 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 MRPL51Q4U2R6 128 aaKnown RBP9.13□□□□□ -0.95
PTPRF-203ENST00000372407 C8orf49Q96NF6 230 aa9.13□□□□□ -0.95
PTPRF-203ENST00000372407 CHD3Q12873 2000 aaKnown RBP9.13□□□□□ -0.95
PTPRF-203ENST00000372407 TRAV8-3A0A0A6YYJ7 113 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 RPL35AP18077 110 aaKnown RBP9.12□□□□□ -0.95
PTPRF-203ENST00000372407 VOPP1Q96AW1 172 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 MSMBP08118 114 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 IGLC1P0CG04 106 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 GATA3P23771 443 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 LGALS9BQ3B8N2 356 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 LGALS9CQ6DKI2 356 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 OVOL2Q9BRP0 275 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 LAMTOR3Q9UHA4 124 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 LINC01356Q8N9X3 169 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 LYPD6BQ8NI32 183 aa9.12□□□□□ -0.95
PTPRF-203ENST00000372407 C2CD3Q4AC94 2353 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 PMVKQ15126 192 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 IGF2-ASQ6U949 168 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 RNF166Q96A37 237 aaPredicted RBP9.11□□□□□ -0.95
PTPRF-203ENST00000372407 TRBV20-1A0A075B6N2 111 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 SDHAF1A6NFY7 115 aa9.11□□□□□ -0.95
PTPRF-203ENST00000372407 KNCNA6PVL3 124 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms