RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TAS2R60P59551 318 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 ELOBQ15370 118 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 PSMG4Q5JS54 123 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 FMC1Q96HJ9 113 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 VGLL1Q99990 258 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 OR4C46A6NHA9 309 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 S100A9P06702 114 aaKnown RBP14.86□□□□□ -0.03
CLN3-205ENST00000359984 UBE2G1P62253 170 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 CENPWQ5EE01 88 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 C9orf66Q5T8R8 295 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 TMEM75Q8N9X5 138 aa14.86□□□□□ -0.03
CLN3-205ENST00000359984 PGPEP1LA6NFU8 196 aa14.85□□□□□ -0.03
CLN3-205ENST00000359984 INSL3P51460 131 aa14.85□□□□□ -0.03
CLN3-205ENST00000359984 IGF2BP2-AS1Q96M15 143 aa14.85□□□□□ -0.03
CLN3-205ENST00000359984 CTDSP1Q9GZU7 261 aa14.85□□□□□ -0.03
CLN3-205ENST00000359984 TRRAPQ9Y4A5 3859 aa14.85□□□□□ -0.03
CLN3-205ENST00000359984 C9JCJ5 164 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 ZNF705DP0CH99 300 aaPredicted RBP14.84□□□□□ -0.03
CLN3-205ENST00000359984 ZNF705BP0CI00 300 aaPredicted RBP14.84□□□□□ -0.03
CLN3-205ENST00000359984 GNG4P50150 75 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 ERCC8Q13216 396 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 RBAKDNA6NC62 111 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 F6UB75 175 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 ADIRFQ15847 76 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 MCRIP2Q9BUT9 160 aaKnown RBP14.84□□□□□ -0.03
CLN3-205ENST00000359984 PSG8Q9UQ74 426 aa14.84□□□□□ -0.03
CLN3-205ENST00000359984 TRBV6-1A0A0K0K1D8 114 aa14.83□□□□□ -0.04
CLN3-205ENST00000359984 PRNTQ86SH4 94 aa14.83□□□□□ -0.04
CLN3-205ENST00000359984 Q86TA4 180 aa14.83□□□□□ -0.04
CLN3-205ENST00000359984 BAGE2Q86Y30 109 aa14.83□□□□□ -0.04
CLN3-205ENST00000359984 AURKAIP1Q9NWT8 199 aaPredicted RBP14.83□□□□□ -0.04
CLN3-205ENST00000359984 SORL1Q92673 2214 aa14.83□□□□□ -0.04
CLN3-205ENST00000359984 IGLV2-8P01709 118 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 CXCL1P09341 107 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 OR8A1Q8NGG7 326 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 OCC1Q8TAD7 63 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 ASCL2Q99929 193 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 AGPAT4-IT1Q9H0P7 198 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 C1orf196B1AJZ1 125 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 LTAP01374 205 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 IGLL1P15814 213 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 DEFB131AP59861 70 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 C9orf47Q6ZRZ4 202 aa14.82□□□□□ -0.04
CLN3-205ENST00000359984 RAB5BP61020 215 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 LINC01551Q86U37 167 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 ZFP82Q8N141 532 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 NHLRC2Q8NBF2 726 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 OR10J6PQ8NGY7 276 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 Q8TAT8 98 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 MAP6D1Q9H9H5 199 aa14.81□□□□□ -0.04
CLN3-205ENST00000359984 NOTCH3Q9UM47 2321 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 FBLL1A6NHQ2 334 aaKnown RBP14.8□□□□□ -0.04
CLN3-205ENST00000359984 BEAN1Q3B7T3 259 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 GDF5OSQ5U4N7 250 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 LY96Q9Y6Y9 160 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 URGCP-MRPS24S4R325 110 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 TGIF2-C20orf24A0A0A6YYL0 155 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 NPIPB6E9PJ23 425 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 HIST1H1AQ02539 215 aaPredicted RBP14.8□□□□□ -0.04
CLN3-205ENST00000359984 ODF3L2Q3SX64 289 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 MLST8Q9BVC4 326 aa14.8□□□□□ -0.04
CLN3-205ENST00000359984 K7EN84 100 aa14.79□□□□□ -0.04
CLN3-205ENST00000359984 TMEM78Q5T7P6 136 aa14.79□□□□□ -0.04
CLN3-205ENST00000359984 GPR61Q9BZJ8 451 aa14.79□□□□□ -0.04
CLN3-205ENST00000359984 ZFP30Q9Y2G7 519 aa14.79□□□□□ -0.04
CLN3-205ENST00000359984 A0A0J9YX75 114 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 ZNF138P52744 262 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 LINC00477Q96M19 166 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 PRR25Q96S07 402 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 SAV1Q9H4B6 383 aaPredicted RBP14.78□□□□□ -0.04
CLN3-205ENST00000359984 PFN1P07737 140 aaKnown RBP14.78□□□□□ -0.04
CLN3-205ENST00000359984 ZNF124Q15973 351 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 EBLN2Q6P2I7 272 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 FOXI2Q6ZQN5 318 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 TMEM183AQ8IXX5 376 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 ANAPC16Q96DE5 110 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 ZNF492Q9P255 531 aa14.78□□□□□ -0.04
CLN3-205ENST00000359984 TRBV24-1A0A075B6N3 115 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 KNCNA6PVL3 124 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 CD7P09564 240 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 CT45A10P0DMU9 189 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 MGST1P10620 155 aaKnown RBP14.77□□□□□ -0.05
CLN3-205ENST00000359984 RIPPLY3P57055 190 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 APRG1Q8IVJ8 170 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 SMIM12Q96EX1 92 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 BIN3Q9NQY0 253 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 PPP1R14DQ9NXH3 145 aa14.77□□□□□ -0.05
CLN3-205ENST00000359984 WIPF1O43516 503 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 OR5I1Q13606 314 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 C8orf49Q96NF6 230 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 PYGO2Q9BRQ0 406 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 GCGP01275 180 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 SAPCD1Q5SSQ6 148 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 ANK2Q01484 3957 aa14.76□□□□□ -0.05
CLN3-205ENST00000359984 OR11H12B2RN74 326 aa14.75□□□□□ -0.05
CLN3-205ENST00000359984 H7BYZ3 331 aa14.75□□□□□ -0.05
CLN3-205ENST00000359984 RPS10P46783 165 aaKnown RBP14.75□□□□□ -0.05
CLN3-205ENST00000359984 CMC4P56277 68 aaPredicted RBP14.75□□□□□ -0.05
CLN3-205ENST00000359984 ACTL10Q5JWF8 245 aa14.75□□□□□ -0.05
CLN3-205ENST00000359984 PRR31Q5SQ13 230 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms