RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DKK2Q9UBU2 259 aa13.88□□□□□ -0.19
SYNPO-201ENST00000307662 C17orf58Q2M2W7 97 aa13.88□□□□□ -0.19
SYNPO-201ENST00000307662 FAM110DQ8TAY7 271 aaPredicted RBP13.88□□□□□ -0.19
SYNPO-201ENST00000307662 IGHV2-70DA0A0C4DH43 119 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 ASPHD1Q5U4P2 390 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 WDR86Q86TI4 376 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 ZNF747Q9BV97 191 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 PRR20EP86478 221 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 PRR20CP86479 221 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 PRR20DP86480 221 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 PRR20BP86481 221 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 PRR20AP86496 221 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 SMIM2Q9BVW6 85 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 SDHAF1A6NFY7 115 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 HLA-DMBP28068 263 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 DOCK11Q5JSL3 2073 aa13.87□□□□□ -0.19
SYNPO-201ENST00000307662 A0A0G2JNJ9 132 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 LTAP01374 205 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 COL8A2P25067 703 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 THAP8Q8NA92 274 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 Q9UFV3 132 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 WT1-ASQ06250 92 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 INS-IGF2F8WCM5 200 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 OVOL3O00110 214 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 SS18Q15532 418 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 BRD3OSQ6XYD6 125 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 ZNF524Q96C55 264 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 KIAA2026Q5HYC2 2103 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 IGLV3-1P01715 115 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 WDR81Q562E7 1941 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 PHF3Q92576 2039 aaKnown RBP13.86□□□□□ -0.19
SYNPO-201ENST00000307662 C15orf65H3BRN8 121 aa13.86□□□□□ -0.19
SYNPO-201ENST00000307662 TRACP01848 142 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 RSPO1Q2MKA7 263 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-201ENST00000307662 UNQ6494/PRO21346Q6UXR6 183 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 BOD1L2Q8IYS8 172 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 TSC2P49815 1807 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 NCOR1O75376 2440 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 Q8TCH9 128 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 CARD19Q96LW7 228 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 RHODO00212 210 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 CEACAM8P31997 349 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GATA4P43694 442 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 NDUFA12Q9UI09 145 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 COL4A6Q14031 1691 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GAGE12JA6NER3 117 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 SAP30O75446 220 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GAGE7O76087 117 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GAGE12FP0CL80 117 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GAGE12GP0CL81 117 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GAGE12IP0CL82 117 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 GAGE4Q13068 117 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 C11orf44Q8N8P7 122 aa13.85□□□□□ -0.19
SYNPO-201ENST00000307662 K7EM74 188 aa13.84□□□□□ -0.19
SYNPO-201ENST00000307662 SPTBN2O15020 2390 aa13.84□□□□□ -0.19
SYNPO-201ENST00000307662 FANCMQ8IYD8 2048 aa13.84□□□□□ -0.19
SYNPO-201ENST00000307662 Q6ZR03 302 aa13.84□□□□□ -0.19
SYNPO-201ENST00000307662 C8orf86Q6ZUL3 223 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 MSRB2Q9Y3D2 182 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 J3QQQ9 107 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 UBE2E2Q96LR5 201 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 ATP6V0E1O15342 81 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 SAA4P35542 130 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 UBL5Q9BZL1 73 aa13.83□□□□□ -0.2
SYNPO-201ENST00000307662 DSCR9P59020 149 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 ANXA2RQ3ZCQ2 193 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 C20orf78Q9BR46 151 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 F8WEM9 126 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 KNCNA6PVL3 124 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 LINC00311Q8N616 119 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 ZNF134P52741 427 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 C15orf53Q8NAA6 179 aa13.82□□□□□ -0.2
SYNPO-201ENST00000307662 MYLKQ15746 1914 aa13.81□□□□□ -0.2
SYNPO-201ENST00000307662 NUPR1O60356 82 aa13.81□□□□□ -0.2
SYNPO-201ENST00000307662 NTN5Q8WTR8 489 aaPredicted RBP13.81□□□□□ -0.2
SYNPO-201ENST00000307662 PCP2Q8IVA1 136 aa13.81□□□□□ -0.2
SYNPO-201ENST00000307662 NLRC5Q86WI3 1866 aa13.81□□□□□ -0.2
SYNPO-201ENST00000307662 ANKRD29Q8N6D5 301 aa13.81□□□□□ -0.2
SYNPO-201ENST00000307662 NSUN5P1Q3KNT7 163 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 IGLC1P0CG04 106 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 GAGE5Q13069 117 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 GAGE6Q13070 117 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 RPL35AP18077 110 aaKnown RBP13.8□□□□□ -0.2
SYNPO-201ENST00000307662 FAM120AOSQ5T036 256 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 Q6ZS92 163 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 TPSG1Q9NRR2 321 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 PLA2G2EQ9NZK7 142 aa13.8□□□□□ -0.2
SYNPO-201ENST00000307662 DEFB131AP59861 70 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 DUX4L9Q6RFH8 374 aaPredicted RBP13.79□□□□□ -0.2
SYNPO-201ENST00000307662 IGHV1OR15-1A0A075B7D0 117 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 ZNF503-AS2A6NEH8 195 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 B4DSR2 109 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 IGHG4P01861 327 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 POU2AF1Q16633 256 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 PROK2Q9HC23 129 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 KLK9Q9UKQ9 250 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 E7EQL1 145 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 SPINK13Q1W4C9 94 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 AKAP6Q13023 2319 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms