RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 OR10J6PQ8NGY7 276 aa10.69□□□□□ -0.7
LIG1-215ENST00000597901 MARVELD1Q9BSK0 173 aa10.69□□□□□ -0.7
LIG1-215ENST00000597901 SLC25A31Q9H0C2 315 aa10.69□□□□□ -0.7
LIG1-215ENST00000597901 ZNF586Q9NXT0 402 aa10.69□□□□□ -0.7
LIG1-215ENST00000597901 DNAH10Q8IVF4 4471 aa10.69□□□□□ -0.7
LIG1-215ENST00000597901 LYRM9A8MSI8 78 aa10.68□□□□□ -0.7
LIG1-215ENST00000597901 MPDU1O75352 247 aa10.68□□□□□ -0.7
LIG1-215ENST00000597901 HTN1P15515 57 aa10.68□□□□□ -0.7
LIG1-215ENST00000597901 TAS2R60P59551 318 aa10.68□□□□□ -0.7
LIG1-215ENST00000597901 TMEM256Q8N2U0 113 aa10.68□□□□□ -0.7
LIG1-215ENST00000597901 OR5AC2Q9NZP5 309 aa10.68□□□□□ -0.7
LIG1-215ENST00000597901 PLAC8L1A1L4L8 177 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 KIR3DS1Q14943 382 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 FCN2Q15485 313 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 LRRC37A5PQ49AS3 106 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 OR5C1Q8NGR4 320 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 NPCDR1Q9BY65 106 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 TMEM14CQ9P0S9 112 aa10.67□□□□□ -0.7
LIG1-215ENST00000597901 CT45A10P0DMU9 189 aa10.66□□□□□ -0.7
LIG1-215ENST00000597901 DEFB130BP0DP73 79 aa10.66□□□□□ -0.7
LIG1-215ENST00000597901 DEFB130AP0DP74 79 aa10.66□□□□□ -0.7
LIG1-215ENST00000597901 HIST1H1EP10412 219 aaKnown RBP10.66□□□□□ -0.7
LIG1-215ENST00000597901 GCSAMLQ5JQS6 135 aa10.66□□□□□ -0.7
LIG1-215ENST00000597901 PARD6GQ9BYG4 376 aaPredicted RBP10.66□□□□□ -0.7
LIG1-215ENST00000597901 TRBV19A0A075B6N1 114 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 H7BYZ3 331 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 ZNF253O75346 499 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 H2BFSP57053 126 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 DEFA1P59665 94 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 DEFA3P59666 94 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 TMEM88Q6PEY1 159 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 THAP6Q8TBB0 222 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 C20orf144Q9BQM9 153 aa10.65□□□□□ -0.7
LIG1-215ENST00000597901 CBY3A6NI87 242 aa10.64□□□□□ -0.71
LIG1-215ENST00000597901 NDUFB4O95168 129 aa10.64□□□□□ -0.71
LIG1-215ENST00000597901 CLINT1Q14677 625 aa10.64□□□□□ -0.71
LIG1-215ENST00000597901 ZNF493Q6ZR52 646 aa10.64□□□□□ -0.71
LIG1-215ENST00000597901 PPP1R1CQ8WVI7 109 aa10.64□□□□□ -0.71
LIG1-215ENST00000597901 TIMM9Q9Y5J7 89 aa10.64□□□□□ -0.71
LIG1-215ENST00000597901 TIMM8BQ9Y5J9 83 aaPredicted RBP10.64□□□□□ -0.71
LIG1-215ENST00000597901 NPIPB6E9PJ23 425 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 M0R3E3 92 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 SSNA1O43805 119 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 PYYP10082 97 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 GFI1BQ5VTD9 330 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 MIR17HGQ75NE6 70 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 C16orf74Q96GX8 76 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 FAM167A-AS1Q96KT0 104 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 WDR61Q9GZS3 305 aaKnown RBP10.63□□□□□ -0.71
LIG1-215ENST00000597901 BATF3Q9NR55 127 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 PRELID1Q9Y255 219 aa10.63□□□□□ -0.71
LIG1-215ENST00000597901 J3KRW8 73 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 M0R2N4 97 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 MPC2O95563 127 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 LEPP41159 167 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 ERCC8Q13216 396 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 RNF212Q495C1 297 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 LINC00336Q6ZUF6 198 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 UBE2DNLQ8IWF7 75 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 CCDC28AQ8IWP9 274 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 BLNKQ8WV28 456 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 MRPL53Q96EL3 112 aaKnown RBP10.62□□□□□ -0.71
LIG1-215ENST00000597901 ODF3Q96PU9 254 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 SLC25A2Q9BXI2 301 aa10.62□□□□□ -0.71
LIG1-215ENST00000597901 NOP10Q9NPE3 64 aaKnown RBP10.62□□□□□ -0.71
LIG1-215ENST00000597901 TRAV12-3A0A0B4J271 114 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 F5H768 121 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 ATP5G1P05496 136 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 NBEAP1P0C6P0 100 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 ATP5G3P48201 142 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 PDE6HQ13956 83 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 EXOC3-AS1Q8N2X6 119 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 RNASE8Q8TDE3 154 aaKnown RBP10.61□□□□□ -0.71
LIG1-215ENST00000597901 TMEM263Q8WUH6 116 aaKnown RBP10.61□□□□□ -0.71
LIG1-215ENST00000597901 LINC00477Q96M19 166 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 AGPAT4-IT1Q9H0P7 198 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 OR51M1Q9H341 326 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 DNAH6Q9C0G6 4158 aa10.61□□□□□ -0.71
LIG1-215ENST00000597901 LGALS9BQ3B8N2 356 aa10.6□□□□□ -0.71
LIG1-215ENST00000597901 C15orf53Q8NAA6 179 aa10.6□□□□□ -0.71
LIG1-215ENST00000597901 FRAS1Q86XX4 4008 aa10.6□□□□□ -0.71
LIG1-215ENST00000597901 C17orf112F2Z3M2 114 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 SLC25A5P05141 298 aaKnown RBP10.59□□□□□ -0.71
LIG1-215ENST00000597901 RPL12P30050 165 aaKnown RBP10.59□□□□□ -0.71
LIG1-215ENST00000597901 ICAM4Q14773 271 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 RNF141Q8WVD5 230 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 FAM19A4Q96LR4 140 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 ATP5SQ99766 215 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 AAMDCQ9H7C9 122 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 KCNIP2Q9NS61 270 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 HSPB11Q9Y547 144 aa10.59□□□□□ -0.71
LIG1-215ENST00000597901 IGLV2-18A0A075B6J9 118 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 C9orf47Q6ZRZ4 202 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 SCGB1C1Q8TD33 95 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 FXYD5Q96DB9 178 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 PYGO2Q9BRQ0 406 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 PAXXQ9BUH6 204 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 MRPL32Q9BYC8 188 aaKnown RBP10.58□□□□□ -0.72
LIG1-215ENST00000597901 SMIM3Q9BZL3 60 aa10.58□□□□□ -0.72
LIG1-215ENST00000597901 FUT9Q9Y231 359 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms