RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SLC38A11Q08AI6 406 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 S100A7AQ86SG5 101 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 C6orf223Q8N319 242 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 RNF141Q8WVD5 230 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 RPUSD4Q96CM3 377 aaKnown RBP10.44□□□□□ -0.74
CLN3-236ENST00000568558 H0YIZ8 118 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 HTN1P15515 57 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 CXCL2P19875 107 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 CDKN1BP46527 198 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 TEPPQ6URK8 271 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 LCN15Q6UWW0 184 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 ZNF493Q6ZR52 646 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 TMEM252Q8N6L7 170 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 RNASE8Q8TDE3 154 aaKnown RBP10.43□□□□□ -0.74
CLN3-236ENST00000568558 LYRM2Q9NU23 88 aaPredicted RBP10.43□□□□□ -0.74
CLN3-236ENST00000568558 OR5AC2Q9NZP5 309 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 MGAT4CQ9UBM8 478 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 RNF24Q9Y225 148 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 LINC00588Q9Y4M8 146 aa10.43□□□□□ -0.74
CLN3-236ENST00000568558 TIMM8BQ9Y5J9 83 aaPredicted RBP10.43□□□□□ -0.74
CLN3-236ENST00000568558 C16orf90A8MZG2 172 aa10.42□□□□□ -0.74
CLN3-236ENST00000568558 SSNA1O43805 119 aa10.42□□□□□ -0.74
CLN3-236ENST00000568558 PTTG1O95997 202 aa10.42□□□□□ -0.74
CLN3-236ENST00000568558 PVALBP20472 110 aaPredicted RBP10.42□□□□□ -0.74
CLN3-236ENST00000568558 LRRC37A5PQ49AS3 106 aa10.42□□□□□ -0.74
CLN3-236ENST00000568558 PXDC1Q5TGL8 231 aa10.42□□□□□ -0.74
CLN3-236ENST00000568558 TMEM263Q8WUH6 116 aaKnown RBP10.42□□□□□ -0.74
CLN3-236ENST00000568558 NMES1Q9C002 83 aa10.42□□□□□ -0.74
CLN3-236ENST00000568558 NOP10Q9NPE3 64 aaKnown RBP10.42□□□□□ -0.74
CLN3-236ENST00000568558 ZNF331Q9NQX6 463 aaPredicted RBP10.42□□□□□ -0.74
CLN3-236ENST00000568558 H7BYZ3 331 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 LINC00305Q7Z4B0 112 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 ZNF546Q86UE3 836 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 MGST2Q99735 147 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 C20orf144Q9BQM9 153 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 SLC50A1Q9BRV3 221 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 GGACTQ9BVM4 153 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 ALG5Q9Y673 324 aa10.41□□□□□ -0.74
CLN3-236ENST00000568558 AGPAT2O15120 278 aa10.4□□□□□ -0.74
CLN3-236ENST00000568558 SNRPCP09234 159 aaKnown RBP10.4□□□□□ -0.74
CLN3-236ENST00000568558 SULT1A1P50225 295 aa10.4□□□□□ -0.74
CLN3-236ENST00000568558 KIR3DS1Q14943 382 aa10.4□□□□□ -0.74
CLN3-236ENST00000568558 SSX7Q7RTT5 188 aa10.4□□□□□ -0.74
CLN3-236ENST00000568558 PARD6GQ9BYG4 376 aaPredicted RBP10.4□□□□□ -0.74
CLN3-236ENST00000568558 PRAC2D3DTV9 90 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 SLC17A3O00476 420 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 CDK2AP2O75956 126 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 CLINT1Q14677 625 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 VWC2Q2TAL6 325 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 GFI1BQ5VTD9 330 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 BPIFA4PQ86YQ2 179 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 LINC00612Q8N6U2 182 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 OR10J6PQ8NGY7 276 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 PPP1R1CQ8WVI7 109 aa10.39□□□□□ -0.75
CLN3-236ENST00000568558 UBE2L5PA0A1B0GUS4 154 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 COX7A2P2O60397 106 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 NHLH2Q02577 135 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 MORN5Q5VZ52 161 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 STX12Q86Y82 276 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 TMEM37Q8WXS4 190 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 UQCC1Q9NVA1 299 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 WDR83OSQ9Y284 106 aa10.38□□□□□ -0.75
CLN3-236ENST00000568558 TRAV26-1A0A087WT03 109 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 E5RGE8 158 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 H3BTX0 84 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 IGLC2P0DOY2 106 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 CYCSP99999 105 aaKnown RBP10.37□□□□□ -0.75
CLN3-236ENST00000568558 OR5I1Q13606 314 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 OPCMLQ14982 345 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 MIC13Q5XKP0 118 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 GNPNAT1Q96EK6 184 aaPredicted RBP10.37□□□□□ -0.75
CLN3-236ENST00000568558 ZNF503Q96F45 646 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 Q9H8V8 135 aa10.37□□□□□ -0.75
CLN3-236ENST00000568558 MPC2O95563 127 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 RLN2P04090 185 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 M6PRP20645 277 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 HOXA5P20719 270 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 S100A11P31949 105 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 CAMLGP49069 296 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 C10orf113Q5VZT2 155 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 CCDC28AQ8IWP9 274 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 RXFP4Q8TDU9 374 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 SAT2Q96F10 170 aaPredicted RBP10.36□□□□□ -0.75
CLN3-236ENST00000568558 KRTAP1-5Q9BYS1 174 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 PXMP4Q9Y6I8 212 aa10.36□□□□□ -0.75
CLN3-236ENST00000568558 A0A0J9YY99 117 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 GAGE12BA1L429 117 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 SNURFLB1AK76 121 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 H3BQ15 152 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 GAGE7O76087 117 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 GAGE12FP0CL80 117 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 GAGE12GP0CL81 117 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 GAGE12IP0CL82 117 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 FGF7P21781 194 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 HBG1P69891 147 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 HBG2P69892 147 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 TTC32Q5I0X7 151 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 MAPKAPK5-AS1Q8N8E1 139 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 OR5C1Q8NGR4 320 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 UPK3BQ9BT76 320 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms