RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CLPSL1A2RUU4 121 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 CHEK1O14757 476 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 PMCHP20382 165 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 SIGLECL1Q8N7X8 197 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 TRBV7-1A0A0A6YYK4 115 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 B4DSR2 109 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 TSTD3H0UI37 97 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 BUB3O43684 328 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 UBR5O95071 2799 aaPredicted RBP12.62□□□□□ -0.39
COL4A1-204ENST00000543140 IGHG4P01861 327 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 TRGV3P03979 118 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 PAX1P15863 534 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 MAPK1IP1LQ8NDC0 245 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 Q8TAT8 98 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 GFRA4Q9GZZ7 299 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 NAGKQ9UJ70 344 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 PTPN13Q12923 2485 aa12.62□□□□□ -0.39
COL4A1-204ENST00000543140 GPX1P07203 203 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 AMTP48728 403 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 BLCAPP62952 87 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 Q6ZS46 218 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 FAM19A2Q8N3H0 131 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 OR4B1Q8NGF8 309 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 VGLL1Q99990 258 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 TPPP3Q9BW30 176 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 ABCA12Q86UK0 2595 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 SRSF1Q07955 248 aaKnown RBP eCLIP12.61□□□□□ -0.39
COL4A1-204ENST00000543140 C19orf54Q5BKX5 351 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 ZNF843Q8N446 348 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 RNF182Q8N6D2 247 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 KCNS1Q96KK3 526 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 ALKBH7Q9BT30 221 aaPredicted RBP12.61□□□□□ -0.39
COL4A1-204ENST00000543140 RNF114Q9Y508 228 aa12.61□□□□□ -0.39
COL4A1-204ENST00000543140 A8MWP6 167 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 ZNF705DP0CH99 300 aaPredicted RBP12.6□□□□□ -0.39
COL4A1-204ENST00000543140 ZNF705BP0CI00 300 aaPredicted RBP12.6□□□□□ -0.39
COL4A1-204ENST00000543140 CT45A10P0DMU9 189 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 FOXA3P55318 350 aaPredicted RBP12.6□□□□□ -0.39
COL4A1-204ENST00000543140 RELQ04864 619 aaPredicted RBP12.6□□□□□ -0.39
COL4A1-204ENST00000543140 TMEM190Q8WZ59 177 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 TMSB15BA0A087X1C1 80 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 COX6B1P14854 86 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 SSTP61278 116 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 C16orf54Q6UWD8 224 aa12.6□□□□□ -0.39
COL4A1-204ENST00000543140 NTF3P20783 257 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 LCN12Q6JVE5 192 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 REC114Q7Z4M0 266 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 FAM231BA6NCW3 169 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 A6NDX4 124 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 TRBV12-3P01733 135 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 S100A7P31151 101 aa12.59□□□□□ -0.39
COL4A1-204ENST00000543140 ARMS2P0C7Q2 107 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 KRTDAPP60985 99 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 METTL26Q96S19 204 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 PRAC2D3DTV9 90 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 ZNF324O75467 553 aaPredicted RBP12.58□□□□□ -0.4
COL4A1-204ENST00000543140 LCNL1Q6ZST4 164 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 PRR25Q96S07 402 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 NRN1Q9NPD7 142 aa12.58□□□□□ -0.4
COL4A1-204ENST00000543140 SERTM2A0A1B0GWG4 89 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 FAM223BA6NKX1 122 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 SH2D1AO60880 128 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 IGHV3-11P01762 117 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 ERCC8Q13216 396 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 FAM223AQ8IWN6 122 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 KLK15Q9H2R5 256 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 IGF1P05019 195 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 ARL3P36405 182 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 CRIP2P52943 208 aaPredicted RBP12.57□□□□□ -0.4
COL4A1-204ENST00000543140 DSCR9P59020 149 aa12.57□□□□□ -0.4
COL4A1-204ENST00000543140 RNASEKQ6P5S7 137 aaKnown RBP12.57□□□□□ -0.4
COL4A1-204ENST00000543140 A0A1B0GUT8 65 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 M0QZ24 198 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 IGHG2P01859 326 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 RAB9AP51151 201 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 TDRG1Q3Y452 100 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 HAX1O00165 279 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 PF4V1P10720 104 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 ZNF80P51504 273 aaPredicted RBP12.56□□□□□ -0.4
COL4A1-204ENST00000543140 SAPCD1Q5SSQ6 148 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 FAM162BQ5T6X4 162 aa12.56□□□□□ -0.4
COL4A1-204ENST00000543140 MUC21A0A0G2JKD1 596 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 MUC21A0A140T8X8 626 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 PPIFP30405 207 aaKnown RBP12.55□□□□□ -0.4
COL4A1-204ENST00000543140 KLF5Q13887 457 aaPredicted RBP12.55□□□□□ -0.4
COL4A1-204ENST00000543140 MUC21Q5SSG8 566 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 TMEM189A5PLL7 270 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 SLC25A16P16260 332 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 KRTAP10-9P60411 292 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 UNQ9165/PRO28630Q6UXU0 137 aa12.55□□□□□ -0.4
COL4A1-204ENST00000543140 A0A087X0K7 114 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 EREGO14944 169 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 HSBP1O75506 76 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 TGFAP01135 160 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 NIT1Q86X76 327 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 LOC102724200A0A096LPH7 203 aaPredicted RBP12.54□□□□□ -0.4
COL4A1-204ENST00000543140 LINC01356Q8N9X3 169 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 NAV2Q8IVL1 2488 aa12.54□□□□□ -0.4
COL4A1-204ENST00000543140 TMEM95Q3KNT9 176 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 239.6 ms