RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 GLRXP35754 106 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 GNG10P50151 68 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 TMBIM6P55061 237 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 MSMO1Q15800 293 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 FOXI2Q6ZQN5 318 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 LINC00299Q6ZSB3 139 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 DEFB132Q7Z7B7 95 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 TEN1Q86WV5 123 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 ATOH7Q8N100 152 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 LRRC18Q8N456 261 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 STX19Q8N4C7 294 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 FAM216BQ8N7L0 139 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 ISOC1Q96CN7 298 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 GGACTQ9BVM4 153 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 DDA1Q9BW61 102 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 PCBD2Q9H0N5 130 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 C10orf95Q9H7T3 257 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 ATPIF1Q9UII2 106 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 ARAP1Q96P48 1450 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 SIP14410 1827 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 ODAMA1E959 279 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 MAP1LC3B2A6NCE7 125 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 OR2T8A6NH00 312 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 JMJD7-PLA2G4BH0Y9G9 81 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 K7ERJ3 54 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 KPNA4O00629 521 aaPredicted RBP0.19□□□□□ -2.38
VPS13A-213ENST00000539950 IGLV3-1P01715 115 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 PDE6GP18545 87 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 PPP1R2P41236 205 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 MRPS36P82909 103 aaKnown RBP0.19□□□□□ -2.38
VPS13A-213ENST00000539950 TFAMQ00059 246 aaKnown RBP0.19□□□□□ -2.38
VPS13A-213ENST00000539950 MIR22HGQ0VDD5 57 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 EIF3IQ13347 325 aaKnown RBP0.19□□□□□ -2.38
VPS13A-213ENST00000539950 SNCBQ16143 134 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 CCSMST1Q4G0I0 132 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 TRIQKQ629K1 86 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 PPP1R2P3Q6NXS1 205 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 DCUN1D2Q6PH85 259 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 IZUMO2Q6UXV1 221 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 GKN2Q86XP6 184 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.19□□□□□ -2.38
VPS13A-213ENST00000539950 OR10AC1Q8NH08 325 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 OR4K15Q8NH41 348 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 THEM6Q8WUY1 208 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 ZNF714Q96N38 554 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 CST11Q9H112 138 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 GID8Q9NWU2 228 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 NAT8BQ9UHF3 227 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 LAMTOR2Q9Y2Q5 125 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 BCL9O00512 1426 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 DOCK4Q8N1I0 1966 aa0.19□□□□□ -2.38
VPS13A-213ENST00000539950 NUP210LQ5VU65 1888 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 TRBV27A0A0K0K1C4 114 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 C9orf170A2RU37 121 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 PRORSD1PA6NEY8 169 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 E7EQ34 232 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 C5orf67F2Z3F1 127 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 GABARAPH6UMI1 98 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 FAM107AO95990 144 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 DNAL4O96015 105 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 CD2P06729 351 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 FREM3P0C091 2139 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 SAA1P0DJI8 122 aaPredicted RBP0.18□□□□□ -2.38
VPS13A-213ENST00000539950 CCL4P13236 92 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 FABP4P15090 132 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 G0S2P27469 103 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 SRP9P49458 86 aaKnown RBP0.18□□□□□ -2.38
VPS13A-213ENST00000539950 POLR2HP52434 150 aaKnown RBP0.18□□□□□ -2.38
VPS13A-213ENST00000539950 CIRBPQ14011 172 aaKnown RBP0.18□□□□□ -2.38
VPS13A-213ENST00000539950 ASB16-AS1Q495Z4 193 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 SPATA45Q537H7 98 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 SPATA8Q6RVD6 105 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 C10orf99Q6UWK7 81 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 ZCCHC23Q6ZST2 131 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 IFT20Q8IY31 132 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 C10orf111Q8N326 155 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 FAM24BQ8N5W8 94 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 NAT14Q8WUY8 206 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 BORCS8Q96FH0 119 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 TCEAL2Q9H3H9 227 aaPredicted RBP0.18□□□□□ -2.38
VPS13A-213ENST00000539950 TMEM138Q9NPI0 162 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 MED31Q9Y3C7 131 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 FAM135BQ49AJ0 1406 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 USP54Q70EL1 1684 aa0.18□□□□□ -2.38
VPS13A-213ENST00000539950 SCN8AQ9UQD0 1980 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 A0A0D9SG42 100 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 A0A1B0GV72 72 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 PGRMC1O00264 195 aaKnown RBP0.17□□□□□ -2.38
VPS13A-213ENST00000539950 PFDN1O60925 122 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 KLF7O75840 302 aaPredicted RBP0.17□□□□□ -2.38
VPS13A-213ENST00000539950 PPYP01298 95 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 TRACP01848 142 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 FABP1P07148 127 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 NBEAP1P0C6P0 100 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 S100A11P31949 105 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 RPS28P62857 69 aaKnown RBP0.17□□□□□ -2.38
VPS13A-213ENST00000539950 STX12Q86Y82 276 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 MORN4Q8NDC4 146 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 OR4B1Q8NGF8 309 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 OR9Q1Q8NGQ5 310 aa0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms