RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PPP1R14DQ9NXH3 145 aa10.56□□□□□ -0.72
USP28-204ENST00000537642 TMEM14CQ9P0S9 112 aa10.56□□□□□ -0.72
USP28-204ENST00000537642 HSPB11Q9Y547 144 aa10.56□□□□□ -0.72
USP28-204ENST00000537642 YTHDF2Q9Y5A9 579 aaKnown RBP10.56□□□□□ -0.72
USP28-204ENST00000537642 BIRC6Q9NR09 4857 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 TRBV19A0A075B6N1 114 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 IGHV4-4A0A075B6R2 117 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 ZNF705GA8MUZ8 300 aaPredicted RBP10.55□□□□□ -0.72
USP28-204ENST00000537642 ZNF253O75346 499 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 PTTG1O95997 202 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 PET100P0DJ07 73 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 PYYP10082 97 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 ATP5SQ99766 215 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 SLC25A2Q9BXI2 301 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 PLA2G2EQ9NZK7 142 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 MBD2Q9UBB5 411 aa10.55□□□□□ -0.72
USP28-204ENST00000537642 TEX48A0A1B0GUV7 120 aa10.54□□□□□ -0.72
USP28-204ENST00000537642 NDUFB4O95168 129 aa10.54□□□□□ -0.72
USP28-204ENST00000537642 HIST1H1EP10412 219 aaKnown RBP10.54□□□□□ -0.72
USP28-204ENST00000537642 RPL12P30050 165 aaKnown RBP10.54□□□□□ -0.72
USP28-204ENST00000537642 MIR17HGQ75NE6 70 aa10.54□□□□□ -0.72
USP28-204ENST00000537642 RPP25LQ8N5L8 163 aaKnown RBP10.54□□□□□ -0.72
USP28-204ENST00000537642 OR10J6PQ8NGY7 276 aa10.54□□□□□ -0.72
USP28-204ENST00000537642 FAM167A-AS1Q96KT0 104 aa10.54□□□□□ -0.72
USP28-204ENST00000537642 NIPSNAP3BQ9BS92 247 aa10.54□□□□□ -0.72
USP28-204ENST00000537642 PARD6GQ9BYG4 376 aaPredicted RBP10.54□□□□□ -0.72
USP28-204ENST00000537642 FRAS1Q86XX4 4008 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 AZU1P20160 251 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 CDKN1BP46527 198 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 KIR3DS1Q14943 382 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 LINC01587Q99440 93 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 SMIM3Q9BZL3 60 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 KCNIP2Q9NS61 270 aa10.53□□□□□ -0.72
USP28-204ENST00000537642 C17orf112F2Z3M2 114 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 M0R3E3 92 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 PDE6HQ13956 83 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 OXA1LQ15070 435 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 TMEM256Q8N2U0 113 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 BLNKQ8WV28 456 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 MRPL53Q96EL3 112 aaKnown RBP10.52□□□□□ -0.73
USP28-204ENST00000537642 WFDC1Q9HC57 220 aa10.52□□□□□ -0.73
USP28-204ENST00000537642 PLAC8L1A1L4L8 177 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 NPIPB6E9PJ23 425 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 CT45A10P0DMU9 189 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 TSPOP30536 169 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 TAS2R60P59551 318 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 EXOC3-AS1Q8N2X6 119 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 MRPL32Q9BYC8 188 aaKnown RBP10.51□□□□□ -0.73
USP28-204ENST00000537642 FUT9Q9Y231 359 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 PRELID1Q9Y255 219 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 TIMM9Q9Y5J7 89 aa10.51□□□□□ -0.73
USP28-204ENST00000537642 IFNA5P01569 189 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 DAD1P61803 113 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 FCN2Q15485 313 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 FFAR4Q5NUL3 377 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 GFI1BQ5VTD9 330 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 SCGB1C1Q8TD33 95 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 ODF3Q96PU9 254 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 OR51M1Q9H341 326 aa10.5□□□□□ -0.73
USP28-204ENST00000537642 LYRM9A8MSI8 78 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 NBEAP1P0C6P0 100 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 HTN1P15515 57 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 ERCC8Q13216 396 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 RNF141Q8WVD5 230 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 FXYD5Q96DB9 178 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 ZNF503Q96F45 646 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 C20orf144Q9BQM9 153 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 NDUFAF3Q9BU61 184 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 PAXXQ9BUH6 204 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 MED28Q9H204 178 aa10.49□□□□□ -0.73
USP28-204ENST00000537642 H7BYZ3 331 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 J3KRW8 73 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 OR10J4P0C629 311 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 HTN3P15516 51 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 LEPP41159 167 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 ICAM4Q14773 271 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 C16orf74Q96GX8 76 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 AAMDCQ9H7C9 122 aa10.48□□□□□ -0.73
USP28-204ENST00000537642 OR7C2O60412 319 aa10.47□□□□□ -0.73
USP28-204ENST00000537642 RNASE8Q8TDE3 154 aaKnown RBP10.47□□□□□ -0.73
USP28-204ENST00000537642 PHYHIPLQ96FC7 376 aa10.47□□□□□ -0.73
USP28-204ENST00000537642 FAM210BQ96KR6 192 aa10.47□□□□□ -0.73
USP28-204ENST00000537642 AGPAT4-IT1Q9H0P7 198 aa10.47□□□□□ -0.73
USP28-204ENST00000537642 IGKV2-40A0A087WW87 121 aaPredicted RBP10.46□□□□□ -0.73
USP28-204ENST00000537642 TRAV12-3A0A0B4J271 114 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 EIF3GO75821 320 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP28-204ENST00000537642 IGKV2D-40P01614 121 aaPredicted RBP10.46□□□□□ -0.73
USP28-204ENST00000537642 DEFB130BP0DP73 79 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 DEFB130AP0DP74 79 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 Q5BKY6 102 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 FAM122CQ6P4D5 195 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 ZNF493Q6ZR52 646 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 C9orf47Q6ZRZ4 202 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 TMEM263Q8WUH6 116 aaKnown RBP10.46□□□□□ -0.73
USP28-204ENST00000537642 FAM19A4Q96LR4 140 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 LINC00477Q96M19 166 aa10.46□□□□□ -0.73
USP28-204ENST00000537642 AQP10Q96PS8 301 aa10.45□□□□□ -0.74
USP28-204ENST00000537642 VGLL1Q99990 258 aa10.45□□□□□ -0.74
USP28-204ENST00000537642 TIMM8BQ9Y5J9 83 aaPredicted RBP10.45□□□□□ -0.74
USP28-204ENST00000537642 C7orf71A4D174 169 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms