RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PRAC2D3DTV9 90 aa12.79□□□□□ -0.36
UPF3A-203ENST00000474056 PPP1R14DQ9NXH3 145 aa12.79□□□□□ -0.36
UPF3A-203ENST00000474056 ZNF586Q9NXT0 402 aa12.79□□□□□ -0.36
UPF3A-203ENST00000474056 FRAS1Q86XX4 4008 aa12.79□□□□□ -0.36
UPF3A-203ENST00000474056 TEX48A0A1B0GUV7 120 aa12.78□□□□□ -0.36
UPF3A-203ENST00000474056 NIPSNAP3BQ9BS92 247 aa12.78□□□□□ -0.36
UPF3A-203ENST00000474056 PARD6GQ9BYG4 376 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-203ENST00000474056 MPC2O95563 127 aa12.77□□□□□ -0.37
UPF3A-203ENST00000474056 CDKN1BP46527 198 aa12.77□□□□□ -0.37
UPF3A-203ENST00000474056 GUK1Q16774 197 aa12.77□□□□□ -0.37
UPF3A-203ENST00000474056 WDR61Q9GZS3 305 aaKnown RBP12.77□□□□□ -0.37
UPF3A-203ENST00000474056 ZNF253O75346 499 aa12.76□□□□□ -0.37
UPF3A-203ENST00000474056 PYYP10082 97 aa12.76□□□□□ -0.37
UPF3A-203ENST00000474056 KIR3DS1Q14943 382 aa12.76□□□□□ -0.37
UPF3A-203ENST00000474056 OR10J6PQ8NGY7 276 aa12.76□□□□□ -0.37
UPF3A-203ENST00000474056 TMEM14CQ9P0S9 112 aa12.76□□□□□ -0.37
UPF3A-203ENST00000474056 HSPB11Q9Y547 144 aa12.76□□□□□ -0.37
UPF3A-203ENST00000474056 TRBV19A0A075B6N1 114 aa12.75□□□□□ -0.37
UPF3A-203ENST00000474056 AZU1P20160 251 aa12.75□□□□□ -0.37
UPF3A-203ENST00000474056 LINC01587Q99440 93 aa12.75□□□□□ -0.37
UPF3A-203ENST00000474056 SLC25A2Q9BXI2 301 aa12.75□□□□□ -0.37
UPF3A-203ENST00000474056 PLAC8L1A1L4L8 177 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 M0R3E3 92 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 NDUFB4O95168 129 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 PET100P0DJ07 73 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 HIST1H1EP10412 219 aaKnown RBP12.74□□□□□ -0.37
UPF3A-203ENST00000474056 DAD1P61803 113 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 OXA1LQ15070 435 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 MIR17HGQ75NE6 70 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 TMEM256Q8N2U0 113 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 ATP5SQ99766 215 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 NDUFAF3Q9BU61 184 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 MBD2Q9UBB5 411 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 ALG5Q9Y673 324 aa12.74□□□□□ -0.37
UPF3A-203ENST00000474056 HTN3P15516 51 aa12.73□□□□□ -0.37
UPF3A-203ENST00000474056 TSPOP30536 169 aa12.73□□□□□ -0.37
UPF3A-203ENST00000474056 BLNKQ8WV28 456 aa12.73□□□□□ -0.37
UPF3A-203ENST00000474056 FAM167A-AS1Q96KT0 104 aa12.73□□□□□ -0.37
UPF3A-203ENST00000474056 NPIPB6E9PJ23 425 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 C17orf112F2Z3M2 114 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 J3KRW8 73 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 HTN1P15515 57 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 RPL12P30050 165 aaKnown RBP12.72□□□□□ -0.37
UPF3A-203ENST00000474056 TAS2R60P59551 318 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 PDE6HQ13956 83 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 MRPL53Q96EL3 112 aaKnown RBP12.72□□□□□ -0.37
UPF3A-203ENST00000474056 SMIM3Q9BZL3 60 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 KCNIP2Q9NS61 270 aa12.72□□□□□ -0.37
UPF3A-203ENST00000474056 LYRM9A8MSI8 78 aa12.71□□□□□ -0.37
UPF3A-203ENST00000474056 CT45A10P0DMU9 189 aa12.71□□□□□ -0.37
UPF3A-203ENST00000474056 FCN2Q15485 313 aa12.71□□□□□ -0.37
UPF3A-203ENST00000474056 GFI1BQ5VTD9 330 aa12.71□□□□□ -0.37
UPF3A-203ENST00000474056 EXOC3-AS1Q8N2X6 119 aa12.71□□□□□ -0.37
UPF3A-203ENST00000474056 MRPL32Q9BYC8 188 aaKnown RBP12.71□□□□□ -0.37
UPF3A-203ENST00000474056 TIMM9Q9Y5J7 89 aa12.71□□□□□ -0.37
UPF3A-203ENST00000474056 NACAE9PAV3 2078 aa12.71□□□□□ -0.38
UPF3A-203ENST00000474056 PTTG1O95997 202 aa12.7□□□□□ -0.38
UPF3A-203ENST00000474056 C16orf74Q96GX8 76 aa12.7□□□□□ -0.38
UPF3A-203ENST00000474056 C20orf144Q9BQM9 153 aa12.7□□□□□ -0.38
UPF3A-203ENST00000474056 OR51M1Q9H341 326 aa12.7□□□□□ -0.38
UPF3A-203ENST00000474056 FUT9Q9Y231 359 aa12.7□□□□□ -0.38
UPF3A-203ENST00000474056 H7BYZ3 331 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 ERCC8Q13216 396 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 FFAR4Q5NUL3 377 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 RNASE8Q8TDE3 154 aaKnown RBP12.69□□□□□ -0.38
UPF3A-203ENST00000474056 ODF3Q96PU9 254 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 PAXXQ9BUH6 204 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 WFDC1Q9HC57 220 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 PRELID1Q9Y255 219 aa12.69□□□□□ -0.38
UPF3A-203ENST00000474056 IFNA5P01569 189 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 OR10J4P0C629 311 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 NBEAP1P0C6P0 100 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 P0DMU3 169 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 FAM231AP0DMU4 169 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 FAM231CP0DMU5 169 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 DEFB130BP0DP73 79 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 DEFB130AP0DP74 79 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 LEPP41159 167 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 ICAM4Q14773 271 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 TMEM263Q8WUH6 116 aaKnown RBP12.68□□□□□ -0.38
UPF3A-203ENST00000474056 FXYD5Q96DB9 178 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 FAM210BQ96KR6 192 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 AAMDCQ9H7C9 122 aa12.68□□□□□ -0.38
UPF3A-203ENST00000474056 FAM122CQ6P4D5 195 aa12.67□□□□□ -0.38
UPF3A-203ENST00000474056 TMEM88Q6PEY1 159 aa12.67□□□□□ -0.38
UPF3A-203ENST00000474056 SCGB1C1Q8TD33 95 aa12.67□□□□□ -0.38
UPF3A-203ENST00000474056 ZNF503Q96F45 646 aa12.67□□□□□ -0.38
UPF3A-203ENST00000474056 PHYHIPLQ96FC7 376 aa12.67□□□□□ -0.38
UPF3A-203ENST00000474056 TRAV12-3A0A0B4J271 114 aa12.66□□□□□ -0.38
UPF3A-203ENST00000474056 OR7C2O60412 319 aa12.66□□□□□ -0.38
UPF3A-203ENST00000474056 ZNF493Q6ZR52 646 aa12.66□□□□□ -0.38
UPF3A-203ENST00000474056 POM121L12Q8N7R1 296 aa12.66□□□□□ -0.38
UPF3A-203ENST00000474056 RNF141Q8WVD5 230 aa12.66□□□□□ -0.38
UPF3A-203ENST00000474056 AGPAT4-IT1Q9H0P7 198 aa12.66□□□□□ -0.38
UPF3A-203ENST00000474056 NOP10Q9NPE3 64 aaKnown RBP12.66□□□□□ -0.38
UPF3A-203ENST00000474056 TIMM8BQ9Y5J9 83 aaPredicted RBP12.66□□□□□ -0.38
UPF3A-203ENST00000474056 IGKV2-40A0A087WW87 121 aaPredicted RBP12.65□□□□□ -0.38
UPF3A-203ENST00000474056 EIF3GO75821 320 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF3A-203ENST00000474056 IGKV2D-40P01614 121 aaPredicted RBP12.65□□□□□ -0.38
UPF3A-203ENST00000474056 FAM19A4Q96LR4 140 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms