RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 CDKN1BP46527 198 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 GCSAMLQ5JQS6 135 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 BAP18Q8IXM2 172 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 TMEM256Q8N2U0 113 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 HSPB11Q9Y547 144 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 ALG5Q9Y673 324 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 TRBV19A0A075B6N1 114 aa16.44■□□□□ 0.22
PTPN4-208ENST00000460289 FAM222AQ5U5X8 452 aa16.44■□□□□ 0.22
PTPN4-208ENST00000460289 NIPSNAP3BQ9BS92 247 aa16.44■□□□□ 0.22
PTPN4-208ENST00000460289 YTHDF2Q9Y5A9 579 aaKnown RBP16.44■□□□□ 0.22
PTPN4-208ENST00000460289 TIMM9Q9Y5J7 89 aa16.44■□□□□ 0.22
PTPN4-208ENST00000460289 IGHV4-4A0A075B6R2 117 aa16.43■□□□□ 0.22
PTPN4-208ENST00000460289 TSPOP30536 169 aa16.43■□□□□ 0.22
PTPN4-208ENST00000460289 PDE6HQ13956 83 aa16.43■□□□□ 0.22
PTPN4-208ENST00000460289 LINC01587Q99440 93 aa16.43■□□□□ 0.22
PTPN4-208ENST00000460289 MBD2Q9UBB5 411 aa16.43■□□□□ 0.22
PTPN4-208ENST00000460289 PRAC2D3DTV9 90 aa16.42■□□□□ 0.22
PTPN4-208ENST00000460289 IFNA5P01569 189 aa16.42■□□□□ 0.22
PTPN4-208ENST00000460289 PRB4P10163 310 aaPredicted RBP16.42■□□□□ 0.22
PTPN4-208ENST00000460289 OXA1LQ15070 435 aa16.42■□□□□ 0.22
PTPN4-208ENST00000460289 RPP25LQ8N5L8 163 aaKnown RBP16.42■□□□□ 0.22
PTPN4-208ENST00000460289 SCGB1C1Q8TD33 95 aa16.42■□□□□ 0.22
PTPN4-208ENST00000460289 MRPL53Q96EL3 112 aaKnown RBP16.42■□□□□ 0.22
PTPN4-208ENST00000460289 MRPL32Q9BYC8 188 aaKnown RBP16.42■□□□□ 0.22
PTPN4-208ENST00000460289 ZNF705GA8MUZ8 300 aaPredicted RBP16.41■□□□□ 0.22
PTPN4-208ENST00000460289 PYYP10082 97 aa16.41■□□□□ 0.22
PTPN4-208ENST00000460289 SLC25A2Q9BXI2 301 aa16.41■□□□□ 0.22
PTPN4-208ENST00000460289 PRELID1Q9Y255 219 aa16.41■□□□□ 0.22
PTPN4-208ENST00000460289 TAS2R60P59551 318 aa16.4■□□□□ 0.22
PTPN4-208ENST00000460289 MIR17HGQ75NE6 70 aa16.4■□□□□ 0.22
PTPN4-208ENST00000460289 C20orf144Q9BQM9 153 aa16.4■□□□□ 0.22
PTPN4-208ENST00000460289 MED28Q9H204 178 aa16.4■□□□□ 0.22
PTPN4-208ENST00000460289 FUT9Q9Y231 359 aa16.4■□□□□ 0.22
PTPN4-208ENST00000460289 NDUFB4O95168 129 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 BLNKQ8WV28 456 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 FAM167A-AS1Q96KT0 104 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 NDUFAF3Q9BU61 184 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 SMIM3Q9BZL3 60 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 OR51M1Q9H341 326 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 AAMDCQ9H7C9 122 aa16.39■□□□□ 0.21
PTPN4-208ENST00000460289 LYRM9A8MSI8 78 aa16.38■□□□□ 0.21
PTPN4-208ENST00000460289 NPIPB6E9PJ23 425 aa16.38■□□□□ 0.21
PTPN4-208ENST00000460289 PRM2P04554 102 aa16.38■□□□□ 0.21
PTPN4-208ENST00000460289 DAD1P61803 113 aa16.38■□□□□ 0.21
PTPN4-208ENST00000460289 FAM210BQ96KR6 192 aa16.38■□□□□ 0.21
PTPN4-208ENST00000460289 ODF3Q96PU9 254 aa16.38■□□□□ 0.21
PTPN4-208ENST00000460289 H7BYZ3 331 aa16.37■□□□□ 0.21
PTPN4-208ENST00000460289 NBEAP1P0C6P0 100 aa16.37■□□□□ 0.21
PTPN4-208ENST00000460289 LEPP41159 167 aa16.37■□□□□ 0.21
PTPN4-208ENST00000460289 PAXXQ9BUH6 204 aa16.37■□□□□ 0.21
PTPN4-208ENST00000460289 PARD6GQ9BYG4 376 aaPredicted RBP16.37■□□□□ 0.21
PTPN4-208ENST00000460289 PLA2G2EQ9NZK7 142 aa16.37■□□□□ 0.21
PTPN4-208ENST00000460289 M0R3E3 92 aa16.36■□□□□ 0.21
PTPN4-208ENST00000460289 CT45A10P0DMU9 189 aa16.36■□□□□ 0.21
PTPN4-208ENST00000460289 HTN1P15515 57 aa16.36■□□□□ 0.21
PTPN4-208ENST00000460289 AZU1P20160 251 aa16.36■□□□□ 0.21
PTPN4-208ENST00000460289 FFAR4Q5NUL3 377 aa16.36■□□□□ 0.21
PTPN4-208ENST00000460289 C16orf74Q96GX8 76 aa16.36■□□□□ 0.21
PTPN4-208ENST00000460289 FCN2Q15485 313 aa16.35■□□□□ 0.21
PTPN4-208ENST00000460289 ZNF493Q6ZR52 646 aa16.35■□□□□ 0.21
PTPN4-208ENST00000460289 EXOC3-AS1Q8N2X6 119 aa16.35■□□□□ 0.21
PTPN4-208ENST00000460289 RNF141Q8WVD5 230 aa16.35■□□□□ 0.21
PTPN4-208ENST00000460289 ICAM4Q14773 271 aa16.34■□□□□ 0.21
PTPN4-208ENST00000460289 GFI1BQ5VTD9 330 aa16.34■□□□□ 0.21
PTPN4-208ENST00000460289 FXYD5Q96DB9 178 aa16.34■□□□□ 0.21
PTPN4-208ENST00000460289 LINC00477Q96M19 166 aa16.34■□□□□ 0.21
PTPN4-208ENST00000460289 OR7C2O60412 319 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 OR10J4P0C629 311 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 HTN3P15516 51 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 TAS2R45P59539 299 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 KIR3DS1Q14943 382 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 ASB13Q8WXK3 278 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 WFDC1Q9HC57 220 aa16.33■□□□□ 0.2
PTPN4-208ENST00000460289 PLAC8L1A1L4L8 177 aa16.32■□□□□ 0.2
PTPN4-208ENST00000460289 CCDC28AQ8IWP9 274 aa16.32■□□□□ 0.2
PTPN4-208ENST00000460289 TMEM263Q8WUH6 116 aaKnown RBP16.32■□□□□ 0.2
PTPN4-208ENST00000460289 TIMM8BQ9Y5J9 83 aaPredicted RBP16.32■□□□□ 0.2
PTPN4-208ENST00000460289 J3KRW8 73 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 P0DMU3 169 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 FAM231AP0DMU4 169 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 FAM231CP0DMU5 169 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 ERCC8Q13216 396 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 KHDC3LQ587J8 217 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 FAM122CQ6P4D5 195 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 LYPD1Q8N2G4 141 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 AGPAT4-IT1Q9H0P7 198 aa16.31■□□□□ 0.2
PTPN4-208ENST00000460289 SLC25A5P05141 298 aaKnown RBP16.3■□□□□ 0.2
PTPN4-208ENST00000460289 DEFB130BP0DP73 79 aa16.3■□□□□ 0.2
PTPN4-208ENST00000460289 DEFB130AP0DP74 79 aa16.3■□□□□ 0.2
PTPN4-208ENST00000460289 ACOT6Q3I5F7 207 aaPredicted RBP16.3■□□□□ 0.2
PTPN4-208ENST00000460289 C9orf47Q6ZRZ4 202 aa16.3■□□□□ 0.2
PTPN4-208ENST00000460289 RNASE8Q8TDE3 154 aaKnown RBP16.3■□□□□ 0.2
PTPN4-208ENST00000460289 KMT2AQ03164 3969 aa16.29■□□□□ 0.2
PTPN4-208ENST00000460289 TRAV12-3A0A0B4J271 114 aa16.29■□□□□ 0.2
PTPN4-208ENST00000460289 GIPP09681 153 aaPredicted RBP16.29■□□□□ 0.2
PTPN4-208ENST00000460289 M6PRP20645 277 aa16.29■□□□□ 0.2
PTPN4-208ENST00000460289 ZNF266Q14584 549 aa16.29■□□□□ 0.2
PTPN4-208ENST00000460289 RGS21Q2M5E4 152 aa16.29■□□□□ 0.2
PTPN4-208ENST00000460289 TMEM78Q5T7P6 136 aa16.29■□□□□ 0.2
PTPN4-208ENST00000460289 AQP10Q96PS8 301 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms