RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 TTC28Q96AY4 2481 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 CGB1A6NKQ9 187 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 SIGLEC9Q9Y336 463 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF329Q86UD4 541 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 FAM27E3Q08E93 113 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 FAM120AOSQ5T036 256 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 ORMDL3Q8N138 153 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 LINC00527Q9UJ94 153 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MYO9AB2RTY4 2548 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 HOXA4Q00056 320 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-212ENST00000423061 PRDX2P32119 198 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 PFN2P35080 140 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 NDUFB3O43676 98 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 CUL9Q8IWT3 2517 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 KIAA1671Q9BY89 1806 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MGPP08493 103 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 TRGV5A0A0B4J1U4 118 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MAGEA5P43359 124 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 WIPF2Q8TF74 440 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A53Q5H9E4 307 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 DEFB108BQ8NET1 73 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV2D-26A0A0A0MRZ7 120 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 TIMM23O14925 209 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 LPAL2Q16609 132 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 TCL1BO95988 128 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 GTF3C1Q12789 2109 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 LEAP2Q969E1 77 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 ADARB2-AS1A8MUL3 147 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 NXPH1P58417 271 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MORN3Q6PF18 240 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MRPL35Q9NZE8 188 aaKnown RBP2.75□□□□□ -1.97
SYNE1-212ENST00000423061 TRAV3A0A0B4J244 114 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MRPS12O15235 138 aaKnown RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 PRB3Q04118 309 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 Q6ZS52 159 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 LYPD6Q86Y78 171 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ATP6V0E2Q8NHE4 81 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 HCFC1P51610 2035 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV1-6A0A0C4DH72 117 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 FOXS1O43638 330 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 HIGD1BQ9P298 99 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 RPUSD1Q9UJJ7 312 aaKnown RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 FOXA2Q9Y261 457 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 TRIP6Q15654 476 aaKnown RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM14EPQ6UXP3 125 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM92Q6UXU6 159 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 DLL3Q9NYJ7 618 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 CRXO43186 299 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 HIST1H4AP62805 103 aaKnown RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 SMRP1Q8NCR6 262 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 VWCEQ96DN2 955 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ATP5L2Q7Z4Y8 100 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 RNF138Q8WVD3 245 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 HCP5Q6MZN7 132 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ODF3L1Q8IXM7 274 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 IGHG4P01861 327 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF441Q8N8Z8 693 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A39Q9BZJ4 359 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 LGALS1P09382 135 aaKnown RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 GATA1P15976 413 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 UBE2WQ96B02 151 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 TNFAIP6P98066 277 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 WDR31Q8NA23 367 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 FMC1Q96HJ9 113 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV1-45A0A0A0MS14 117 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 NDPQ00604 133 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 MRPL51Q4U2R6 128 aaKnown RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A47Q6Q0C1 308 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 PRO1854Q9UHT4 67 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 MS4A18H0YCH9 400 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 CFPP27918 469 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 MS4A18Q3C1V0 323 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 C10orf128Q5T292 105 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 LYZL1Q6UWQ5 148 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 MPLKIPQ8TAP9 179 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 COX7A1P24310 79 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 PRR30Q53SZ7 412 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 C19orf54Q5BKX5 351 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 PRO0461Q9UI25 63 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 GUSBP11Q6P575 273 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 MYO18BQ8IUG5 2567 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 MYCNOSP40205 109 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM158Q8WZ71 300 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A10Q9UBX3 287 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 HLA-DMBP28068 263 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 SPRY4Q9C004 299 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 WDR83OSQ9Y284 106 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 PCNX2A6NKB5 2137 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 NPC2P61916 151 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ECSCRQ19T08 205 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 C1orf147Q96MC9 270 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-212ENST00000423061 OTORQ9NRC9 128 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ACACBO00763 2458 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 BAALC-AS2P0C853 105 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF524Q96C55 264 aa2.74□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF462Q96JM2 2506 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV1-39P01597 117 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV1D-39P04432 117 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 LINC00114Q6XXX2 140 aa2.73□□□□□ -1.97
SYNE1-212ENST00000423061 TRAV17A0A0B4J275 112 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms