RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C12orf45Q8N5I9 185 aaPredicted RBP13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 C2orf50Q96LR7 162 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 VPS13DQ5THJ4 4388 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 FAM25EA8MYX2 175 aa13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 CCSO14618 274 aa13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 PVALBP20472 110 aaPredicted RBP13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 IGFL4Q6B9Z1 124 aa13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 LCN15Q6UWW0 184 aa13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 LINC00305Q7Z4B0 112 aa13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 OR8A1Q8NGG7 326 aa13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 YTHDF2Q9Y5A9 579 aaKnown RBP13.6□□□□□ -0.23
CCDC28A-203ENST00000617445 MRPS12O15235 138 aaKnown RBP13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 UPK1BO75841 260 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 H2AFB2P0C5Z0 115 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 BCAP31P51572 246 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 SPINK13Q1W4C9 94 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 BPIFA4PQ86YQ2 179 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 POM121L12Q8N7R1 296 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 SLC50A1Q9BRV3 221 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 PPP1R14DQ9NXH3 145 aa13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 LSM5Q9Y4Y9 91 aaKnown RBP13.59□□□□□ -0.23
CCDC28A-203ENST00000617445 BOLA2-SMG1P6H3BVE0 249 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 M0R2Z0 102 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 CRXO43186 299 aaPredicted RBP13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 COX7A2P2O60397 106 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 TSPOP30536 169 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 CAV2P51636 162 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 Q6ZRG5 221 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 TMEM256Q8N2U0 113 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 MGST2Q99735 147 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 SEC22CQ9BRL7 303 aa13.58□□□□□ -0.24
CCDC28A-203ENST00000617445 CAMLGP49069 296 aa13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 DAD1P61803 113 aa13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 RHOBP62745 196 aa13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 HIST1H1AQ02539 215 aaPredicted RBP13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 C10orf113Q5VZT2 155 aa13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 C11orf1Q9H5F2 150 aa13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 DNAJC4Q9NNZ3 241 aa13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 ZNF331Q9NQX6 463 aaPredicted RBP13.57□□□□□ -0.24
CCDC28A-203ENST00000617445 DNAH6Q9C0G6 4158 aa13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 LYRM9A8MSI8 78 aa13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 S100A11P31949 105 aa13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 OR1L4Q8NGR5 311 aa13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 TMEM37Q8WXS4 190 aa13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 RPUSD4Q96CM3 377 aaKnown RBP13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 UQCC1Q9NVA1 299 aa13.56□□□□□ -0.24
CCDC28A-203ENST00000617445 CST7O76096 145 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 SULT1A1P50225 295 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 HBG1P69891 147 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 HBG2P69892 147 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 IL15RAQ13261 267 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 VWC2Q2TAL6 325 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 NRARPQ7Z6K4 114 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 ENKURQ8TC29 256 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 CHAC2Q8WUX2 184 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 LYRM2Q9NU23 88 aaPredicted RBP13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 WDR83OSQ9Y284 106 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 PXMP4Q9Y6I8 212 aa13.55□□□□□ -0.24
CCDC28A-203ENST00000617445 FAM24AA6NFZ4 105 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 ZNF705GA8MUZ8 300 aaPredicted RBP13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 GUK1Q16774 197 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 ATP6V1FQ16864 119 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 LINC00336Q6ZUF6 198 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 STX12Q86Y82 276 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 BAP18Q8IXM2 172 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 PFDN5Q99471 154 aa13.54□□□□□ -0.24
CCDC28A-203ENST00000617445 DNAH10Q8IVF4 4471 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 CDKN1BP46527 198 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 RPL29P47914 159 aaKnown RBP13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 TAS2R60P59551 318 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 S100A10P60903 97 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 IFITM3Q01628 133 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 OPCMLQ14982 345 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 LINC01587Q99440 93 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 C20orf144Q9BQM9 153 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 PLA2G2EQ9NZK7 142 aa13.53□□□□□ -0.24
CCDC28A-203ENST00000617445 TRAV12-2A0A075B6T6 113 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 IGLC2P0DOY2 106 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 HTN3P15516 51 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 RAB32Q13637 225 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 RNF212Q495C1 297 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 TMEM252Q8N6L7 170 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 OR10J6PQ8NGY7 276 aa13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 GPN1Q9HCN4 374 aaPredicted RBP13.52□□□□□ -0.25
CCDC28A-203ENST00000617445 MPDU1O75352 247 aa13.51□□□□□ -0.25
CCDC28A-203ENST00000617445 MIC13Q5XKP0 118 aa13.51□□□□□ -0.25
CCDC28A-203ENST00000617445 ZNF493Q6ZR52 646 aa13.51□□□□□ -0.25
CCDC28A-203ENST00000617445 UBE2DNLQ8IWF7 75 aa13.51□□□□□ -0.25
CCDC28A-203ENST00000617445 C15orf53Q8NAA6 179 aa13.51□□□□□ -0.25
CCDC28A-203ENST00000617445 SAT2Q96F10 170 aaPredicted RBP13.51□□□□□ -0.25
CCDC28A-203ENST00000617445 ZNF253O75346 499 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 DEFA1P59665 94 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 DEFA3P59666 94 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 BAXQ07812 192 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 LGALS9BQ3B8N2 356 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 MORN5Q5VZ52 161 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 C16orf74Q96GX8 76 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 SLC39A9Q9NUM3 307 aa13.5□□□□□ -0.25
CCDC28A-203ENST00000617445 UBE2L5PA0A1B0GUS4 154 aa13.49□□□□□ -0.25
CCDC28A-203ENST00000617445 IGSF23A1L1A6 192 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms