RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 PRRC2AP48634 2157 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 CENPVL3A0A0U1RRI6 287 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 A8MWV9 139 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 TBX6O95947 436 aaPredicted RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 TOMM40O96008 361 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 ANGP03950 147 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 IGHV4-31P0DP07 118 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 CDKN1BP46527 198 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 DEFB136Q30KP8 78 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 C1orf194Q5T5A4 169 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00311Q8N616 119 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 RASL10AQ92737 203 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 LYZL4Q96KX0 146 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 NDUFAF3Q9BU61 184 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 C11orf68Q9H3H3 251 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 LIME1Q9H400 295 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 MRPL16Q9NX20 251 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 C2CD3Q4AC94 2353 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 MUC21A0A0G2JKD1 596 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 MUC21A0A140T8X8 626 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 KNCNA6PVL3 124 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 PMS2P5A8MQ11 134 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 H3BMM0 161 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 CIDEAO60543 219 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 CRLF1O75462 422 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 CGAP01215 116 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 HBBP68871 147 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 RHOHQ15669 191 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 CADM3Q8N126 398 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 UBE2WQ96B02 151 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 FANCD2OSQ96PS1 177 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 PRR25Q96S07 402 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 ADAMTS20P59510 1910 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 MTORP42345 2549 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 COL4A6Q14031 1691 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 SZT2Q5T011 3432 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 IGHV7-4-1A0A0J9YVY3 117 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM89A2RUT3 159 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 DIRC3C9JPN6 131 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 C19orf84I3L1E1 186 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 NAPSAO96009 420 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 PPBPP02775 128 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 HOXB4P17483 251 aaPredicted RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 MPZP25189 248 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 ANXA2RQ3ZCQ2 193 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 ORMDL2Q53FV1 153 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 VOPP1Q96AW1 172 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 MEGF9Q9H1U4 602 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 IGHV1OR15-1A0A075B7D0 117 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 C7orf71A4D174 169 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 A6NDN8 102 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 NPIPB5A8MRT5 1133 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 LDLRAD4O15165 306 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 SPRY2O43597 315 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 LEPROTL1O95214 131 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 FSHBP01225 129 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 MDKP21741 143 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 SLURP1P55000 103 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 YPEL3P61236 119 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 KLF5Q13887 457 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 IRF3Q14653 427 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 DEFB135Q30KP9 77 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 KIAA1644Q3SXP7 199 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 CENPWQ5EE01 88 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 MIR17HGQ75NE6 70 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 SLC7A5P1Q8MH63 180 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ORMDL3Q8N138 153 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 C10orf126Q8N4M7 172 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 RNF182Q8N6D2 247 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 THAP8Q8NA92 274 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 COQ2Q96H96 371 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 JKAMPQ9P055 326 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 EPDR1Q9UM22 224 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A096LPF7 62 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 APOHP02749 345 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 BLCAPP62952 87 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 DEFA6Q01524 100 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ZFAND6Q6FIF0 208 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 TEX43Q6ZNM6 134 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 FOXI2Q6ZQN5 318 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF503Q96F45 646 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 FAM210AQ96ND0 272 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM243Q9BU79 118 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 C5orf66Q9H5L9 145 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 RPP21Q9H633 154 aaKnown RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 SMPXQ9UHP9 88 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 FN1P02751 2386 aaKnown RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 TRAV13-1A0A0B4J241 112 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 IGKV1-9A0A0C4DH69 117 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 LOC107984156A0A0G2JMH3 177 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A1W2PRE2 83 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 VCYO14598 125 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 TNFRSF13BO14836 293 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 TRGC2P03986 189 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM95Q3KNT9 176 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 CD300EQ496F6 205 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 FOXL2NBQ6ZUU3 175 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 ARL17AQ8IVW1 177 aa2.34□□□□□ -2.03
SMCHD1-203ENST00000577880 LYPD1Q8N2G4 141 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms