RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 Q6ZTC4 211 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 CHAC2Q8WUX2 184 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 NMES1Q9C002 83 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 DNAJC4Q9NNZ3 241 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 CELA1Q9UNI1 258 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 IGHV3OR16-12A0A075B7B8 117 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 TMEM189A5PLL7 270 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 SIX6O95475 246 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 ATP6V1FQ16864 119 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 LGALS9CQ6DKI2 356 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 BPIFA4PQ86YQ2 179 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 C1orf158Q8N1D5 194 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 ZNF738Q8NE65 137 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 LRRC20Q8TCA0 184 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 GOLT1BQ9Y3E0 138 aa14.58□□□□□ -0.08
CLK3-225ENST00000569063 TRAV10A0A0B4J240 114 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 AMBPP02760 352 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 RPL29P47914 159 aaKnown RBP14.57□□□□□ -0.08
CLK3-225ENST00000569063 DEFA1P59665 94 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 DEFA3P59666 94 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 PSG3Q16557 428 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 C12orf74Q32Q52 190 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 MORN5Q5VZ52 161 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 MIC13Q5XKP0 118 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 OR11H7Q8NGC8 314 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 RFNGQ9Y644 331 aa14.57□□□□□ -0.08
CLK3-225ENST00000569063 UBE2L5PA0A1B0GUS4 154 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 RLN2P04090 185 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 CYCSP99999 105 aaKnown RBP14.56□□□□□ -0.08
CLK3-225ENST00000569063 BAXQ07812 192 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 OPCMLQ14982 345 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 LCN15Q6UWW0 184 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 OR1L4Q8NGR5 311 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 IGF2BP2-AS1Q96M15 143 aa14.56□□□□□ -0.08
CLK3-225ENST00000569063 ZNF331Q9NQX6 463 aaPredicted RBP14.56□□□□□ -0.08
CLK3-225ENST00000569063 IGLL5B9A064 214 aa14.55□□□□□ -0.08
CLK3-225ENST00000569063 E5RGE8 158 aa14.55□□□□□ -0.08
CLK3-225ENST00000569063 OR8A1Q8NGG7 326 aa14.55□□□□□ -0.08
CLK3-225ENST00000569063 PFDN5Q99471 154 aa14.55□□□□□ -0.08
CLK3-225ENST00000569063 SLC50A1Q9BRV3 221 aa14.55□□□□□ -0.08
CLK3-225ENST00000569063 SLC39A9Q9NUM3 307 aa14.55□□□□□ -0.08
CLK3-225ENST00000569063 CRXO43186 299 aaPredicted RBP14.54□□□□□ -0.08
CLK3-225ENST00000569063 MPDU1O75352 247 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 SPART-AS1P0CW21 52 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 IGLC2P0DOY2 106 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 FGF7P21781 194 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 B2MP61769 119 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 NHLH2Q02577 135 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 SPINK13Q1W4C9 94 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 SLC25A31Q9H0C2 315 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 OR5AC2Q9NZP5 309 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 APLNQ9ULZ1 77 aa14.54□□□□□ -0.08
CLK3-225ENST00000569063 M0R2Z0 102 aa14.53□□□□□ -0.08
CLK3-225ENST00000569063 HBE1P02100 147 aa14.53□□□□□ -0.08
CLK3-225ENST00000569063 H2BFSP57053 126 aa14.53□□□□□ -0.08
CLK3-225ENST00000569063 LRRC37A5PQ49AS3 106 aa14.53□□□□□ -0.08
CLK3-225ENST00000569063 ZNF767PQ75MW2 155 aa14.53□□□□□ -0.08
CLK3-225ENST00000569063 RPUSD4Q96CM3 377 aaKnown RBP14.53□□□□□ -0.08
CLK3-225ENST00000569063 DEFB131BA0A096LNP1 70 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 TRAV5A0A0B4J249 113 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 H0YIZ8 118 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 BOLA2-SMG1P6H3BVE0 249 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 EMP1P54849 157 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 HIST1H1AQ02539 215 aaPredicted RBP14.52□□□□□ -0.09
CLK3-225ENST00000569063 GUK1Q16774 197 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 SAT2Q96F10 170 aaPredicted RBP14.52□□□□□ -0.09
CLK3-225ENST00000569063 NPCDR1Q9BY65 106 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 DKK2Q9UBU2 259 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 PXMP4Q9Y6I8 212 aa14.52□□□□□ -0.09
CLK3-225ENST00000569063 TEX48A0A1B0GUV7 120 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 H3BQ15 152 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 INSP01308 110 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 SNRPCP09234 159 aaKnown RBP14.51□□□□□ -0.09
CLK3-225ENST00000569063 RRN3P1Q2M238 152 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 OR5C1Q8NGR4 320 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 TMEM208Q9BTX3 173 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 RNF126Q9BV68 326 aa14.51□□□□□ -0.09
CLK3-225ENST00000569063 IGHV4-4A0A075B6R2 117 aa14.5□□□□□ -0.09
CLK3-225ENST00000569063 LOC102723971A0A1B0GUV8 181 aa14.5□□□□□ -0.09
CLK3-225ENST00000569063 SLC17A3O00476 420 aa14.5□□□□□ -0.09
CLK3-225ENST00000569063 RHOBP62745 196 aa14.5□□□□□ -0.09
CLK3-225ENST00000569063 PPP1R1CQ8WVI7 109 aa14.5□□□□□ -0.09
CLK3-225ENST00000569063 H3BTX0 84 aa14.49□□□□□ -0.09
CLK3-225ENST00000569063 SSNA1O43805 119 aa14.49□□□□□ -0.09
CLK3-225ENST00000569063 FAM222AQ5U5X8 452 aa14.49□□□□□ -0.09
CLK3-225ENST00000569063 BAP18Q8IXM2 172 aa14.49□□□□□ -0.09
CLK3-225ENST00000569063 THAP6Q8TBB0 222 aa14.49□□□□□ -0.09
CLK3-225ENST00000569063 PPP1R14DQ9NXH3 145 aa14.49□□□□□ -0.09
CLK3-225ENST00000569063 TRAV12-2A0A075B6T6 113 aa14.48□□□□□ -0.09
CLK3-225ENST00000569063 ZNF253O75346 499 aa14.48□□□□□ -0.09
CLK3-225ENST00000569063 OXA1LQ15070 435 aa14.48□□□□□ -0.09
CLK3-225ENST00000569063 RPP25LQ8N5L8 163 aaKnown RBP14.48□□□□□ -0.09
CLK3-225ENST00000569063 NIPSNAP3BQ9BS92 247 aa14.48□□□□□ -0.09
CLK3-225ENST00000569063 ZNF586Q9NXT0 402 aa14.48□□□□□ -0.09
CLK3-225ENST00000569063 TMEM14CQ9P0S9 112 aa14.48□□□□□ -0.09
CLK3-225ENST00000569063 YTHDF2Q9Y5A9 579 aaKnown RBP14.48□□□□□ -0.09
CLK3-225ENST00000569063 PRB4P10163 310 aaPredicted RBP14.47□□□□□ -0.09
CLK3-225ENST00000569063 TMEM256Q8N2U0 113 aa14.47□□□□□ -0.09
CLK3-225ENST00000569063 ZNF705GA8MUZ8 300 aaPredicted RBP14.46□□□□□ -0.09
CLK3-225ENST00000569063 PRAC2D3DTV9 90 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms