RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, human

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS39-208	ENST00000564994	ZNF705G	A8MUZ8	300 aa	Predicted RBP	7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	FAM25E	A8MYX2	175 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	GOSR2	O14653	212 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	SNRPC	P09234	159 aa	Known RBP	7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	IL15RA	Q13261	267 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	ZNF846	Q147U1	533 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	PSG3	Q16557	428 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	LINC00305	Q7Z4B0	112 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	ZNF546	Q86UE3	836 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	BAP18	Q8IXM2	172 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	C12orf45	Q8N5I9	185 aa	Predicted RBP	7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	OR8A1	Q8NGG7	326 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	C2orf50	Q96LR7	162 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	CCDC32	Q9BV29	185 aa		7.69	□□□□□ -1.18
VPS39-208	ENST00000564994	PKHD1	P08F94	4074 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	TRAV12-2	A0A075B6T6	113 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	C5orf51	A6NDU8	294 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994		L7N2F9	121 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	CST7	O76096	145 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	INS	P01308	110 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	H2AFB2	P0C5Z0	115 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	BCAP31	P51572	246 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	VAMP2	P63027	116 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	HIST1H1A	Q02539	215 aa	Predicted RBP	7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	OXA1L	Q15070	435 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	PXDC1	Q5TGL8	231 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	TMEM208	Q9BTX3	173 aa		7.68	□□□□□ -1.18
VPS39-208	ENST00000564994	TEX48	A0A1B0GUV7	120 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	PLAC8L1	A1L4L8	177 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994		H3BTX0	84 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	BOLA2-SMG1P6	H3BVE0	249 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	SLC17A3	O00476	420 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994		P0DMU3	169 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	FAM231A	P0DMU4	169 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	FAM231C	P0DMU5	169 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	AZU1	P20160	251 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	CAV2	P51636	162 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	OPCML	Q14982	345 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	NRARP	Q7Z6K4	114 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	S100A7A	Q86SG5	101 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	POM121L12	Q8N7R1	296 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	LRRC20	Q8TCA0	184 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	RPUSD4	Q96CM3	377 aa	Known RBP	7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	ZNF331	Q9NQX6	463 aa	Predicted RBP	7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	WDR83OS	Q9Y284	106 aa		7.67	□□□□□ -1.18
VPS39-208	ENST00000564994	TRAV5	A0A0B4J249	113 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	FAM240B	A0A1B0GVZ2	78 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	IGSF23	A1L1A6	192 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	PRAC2	D3DTV9	90 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994		H3BQ15	152 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	COX7A2P2	O60397	106 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	IGLC2	P0DOY2	106 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	HTN3	P15516	51 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	CXCL2	P19875	107 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	CAMLG	P49069	296 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	S100A10	P60903	97 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	RHOB	P62745	196 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	RAB32	Q13637	225 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	VWC2	Q2TAL6	325 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	C10orf113	Q5VZT2	155 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	MIC13	Q5XKP0	118 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	LCN15	Q6UWW0	184 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	LINC00299	Q6ZSB3	139 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	FAM210B	Q96KR6	192 aa		7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	LYRM2	Q9NU23	88 aa	Predicted RBP	7.66	□□□□□ -1.18
VPS39-208	ENST00000564994	TSPO	P30536	169 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	SULT1A1	P50225	295 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	DAD1	P61803	113 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	ASAH1	Q13510	395 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	KIR3DS1	Q14943	382 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	FCN2	Q15485	313 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	TMEM88	Q6PEY1	159 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	BPIFA4P	Q86YQ2	179 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	TMEM252	Q8N6L7	170 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	SAT2	Q96F10	170 aa	Predicted RBP	7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	SLC50A1	Q9BRV3	221 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	PARD6G	Q9BYG4	376 aa	Predicted RBP	7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	DNAJC4	Q9NNZ3	241 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	UQCC1	Q9NVA1	299 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	RNF24	Q9Y225	148 aa		7.65	□□□□□ -1.18
VPS39-208	ENST00000564994	UBE2L5P	A0A1B0GUS4	154 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	LYRM9	A8MSI8	78 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994		M0R2N4	97 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	PVALB	P20472	110 aa	Predicted RBP	7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	CDKN1B	P46527	198 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	RPL29	P47914	159 aa	Known RBP	7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	B2M	P61769	119 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	IFITM3	Q01628	133 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	RAB31	Q13636	194 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	MZT2B	Q6NZ67	158 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994		Q6ZRG5	221 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	LINC01587	Q99440	93 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	SLC39A9	Q9NUM3	307 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	PPP1R14D	Q9NXH3	145 aa		7.64	□□□□□ -1.19
VPS39-208	ENST00000564994	SIX6	O95475	246 aa		7.63	□□□□□ -1.19
VPS39-208	ENST00000564994	DEFB130B	P0DP73	79 aa		7.63	□□□□□ -1.19
VPS39-208	ENST00000564994	DEFB130A	P0DP74	79 aa		7.63	□□□□□ -1.19
VPS39-208	ENST00000564994	S100A11	P31949	105 aa		7.63	□□□□□ -1.19
VPS39-208	ENST00000564994	TAS2R60	P59551	318 aa		7.63	□□□□□ -1.19
VPS39-208	ENST00000564994	BAX	Q07812	192 aa		7.63	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms