RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CHCHD2Q9Y6H1 151 aaPredicted RBP2.42□□□□□ -2.02
CD44-217ENST00000525348 NUP98P52948 1817 aa2.42□□□□□ -2.02
CD44-217ENST00000525348 MGAMO43451 1857 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 EYSQ5T1H1 3165 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 DUOX1Q9NRD9 1551 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 DLG5Q8TDM6 1919 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 IGLV3-22A0A075B6J6 115 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 TRAV4A0A0B4J268 109 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 FAM240AA0A1B0GVK7 77 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 C5orf49A4QMS7 147 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 IZUMO1RA6ND01 250 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 RIIAD1A6NNX1 92 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 SYS1-DBNDD2H3BUS1 97 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 GABARAPH6UMI1 98 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 M0R129 80 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 FXYD1O00168 92 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 UQCRQO14949 82 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 MRPS12O15235 138 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 EPPINO95925 133 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 RBP4P02753 201 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 MT-ND6P03923 174 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 SRP19P09132 144 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 LINC00032P0C843 101 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 BCL2P10415 239 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 CRYGAP11844 174 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 IGLL1P15814 213 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 FBXW4P57775 412 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 TMEM258P61165 79 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 RPS24P62847 133 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 ZNF90Q03938 601 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 HES1Q14469 280 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 ZNF726P1Q15940 193 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 PMCHL1Q16048 86 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 RRN3P1Q2M238 152 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 ETDBQ3ZM63 59 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 NMSQ5H8A3 153 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 C9orf153Q5TBE3 101 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 FKBP1CQ5VVH2 108 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 DNM1P46Q6ZS02 220 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 TCF23Q7RTU1 214 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 HSD11B1LQ7Z5J1 315 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 MRPL55Q7Z7F7 128 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 C17orf82Q86X59 251 aaPredicted RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 CYB561D1Q8N8Q1 229 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 ZFP62Q8NB50 900 aaPredicted RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 OR10P1Q8NGE3 313 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 OR4X2Q8NGF9 303 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 OR4K13Q8NH42 304 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 CMTM2Q8TAZ6 248 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 C7orf33Q8WU49 177 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 LSM10Q969L4 123 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 C18orf15Q96N68 181 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 TBL1YQ9BQ87 522 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 PLEKHF2Q9H8W4 249 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 OTORQ9NRC9 128 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 KCNIP2Q9NS61 270 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 ZNF835Q9Y2P0 537 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 DNAJC15Q9Y5T4 150 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 PTPRBP23467 1997 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 KIAA1549Q9HCM3 1950 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 CENPFP49454 3210 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 GBF1Q92538 1859 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 NYNRINQ9P2P1 1898 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 SNRNP200O75643 2136 aaKnown RBP2.41□□□□□ -2.02
CD44-217ENST00000525348 COL4A1P02462 1669 aa2.41□□□□□ -2.02
CD44-217ENST00000525348 A0A0C4DFX4 3053 aa2.4□□□□□ -2.02
CD44-217ENST00000525348 HTTP42858 3142 aa2.4□□□□□ -2.02
CD44-217ENST00000525348 LRRC37A2A6NM11 1700 aa2.4□□□□□ -2.02
CD44-217ENST00000525348 C2orf16Q68DN1 1984 aa2.4□□□□□ -2.02
CD44-217ENST00000525348 DOCK4Q8N1I0 1966 aa2.4□□□□□ -2.02
CD44-217ENST00000525348 BRCA2P51587 3418 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 KMT2EQ8IZD2 1858 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 RBAKDNA6NC62 111 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 SMKR1H3BMG3 65 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 H3BMG7 143 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 H7C1H1 209 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 APOC4-APOC2K7ER74 178 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 ISLRO14498 428 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 EIF4EP06730 217 aaKnown RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 FABP2P12104 132 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 PIPP12273 146 aaPredicted RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 CBLN1P23435 193 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 HLA-DMBP28068 263 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 DAPP51397 102 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 LAGE3Q14657 143 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 ELOCQ15369 112 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 OR7A5Q15622 319 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 MSMO1Q15800 293 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 MRPL2Q5T653 305 aaKnown RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 UNQ9165/PRO28630Q6UXU0 137 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 ACP7Q6ZNF0 438 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 C2orf91Q6ZV80 131 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 SSX8Q7RTT4 187 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 ZNF571Q7Z3V5 609 aaPredicted RBP2.4□□□□□ -2.03
CD44-217ENST00000525348 TRAPPC6BQ86SZ2 158 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 TOMM5Q8N4H5 51 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 C10orf126Q8N4M7 172 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 OR5H2Q8NGV7 314 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 OR52P1PQ8NH57 321 aa2.4□□□□□ -2.03
CD44-217ENST00000525348 SGMS2Q8NHU3 365 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms