RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TNFRSF13BO14836 293 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 STXBP6Q8NFX7 210 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 RCHY1Q96PM5 261 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 UFC1Q9Y3C8 167 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 M0R2Z0 102 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 SLAQ13239 276 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 TNFRSF14Q92956 283 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 ARL2-SNX15V9GYD0 113 aa10.82□□□□□ -0.68
CCDC88A-211ENST00000471947 ATG101Q9BSB4 218 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 LINC00574Q9H8X3 128 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 TMEM242Q9NWH2 141 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 TBL2Q9Y4P3 447 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 SCGB2A1O75556 95 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 GCGP01275 180 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 COX6B1P14854 86 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 MAS1LP35410 378 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 TRGV9Q99603 122 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 CDC42EP3Q9UKI2 254 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 IGHV2-70DA0A0C4DH43 119 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 G0S2P27469 103 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 TDRG1Q3Y452 100 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 ZNF562Q6V9R5 426 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 TXNDC17Q9BRA2 123 aa10.81□□□□□ -0.68
CCDC88A-211ENST00000471947 NF1P21359 2839 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 IGHV7-81A0A0B4J1V7 117 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 ACTL10Q5JWF8 245 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 ZNF491Q8N8L2 437 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 YPEL4Q96NS1 127 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 CENPVL3A0A0U1RRI6 287 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 I3L2K1 104 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 SNAI2O43623 268 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 GOSR1O95249 250 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 TXN2Q99757 166 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 SMKR1H3BMG3 65 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 TMEM116Q8NCL8 245 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 C19orf24Q9BVV8 132 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 PSG8Q9UQ74 426 aa10.8□□□□□ -0.68
CCDC88A-211ENST00000471947 A8MWL6 223 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 Q6ZS46 218 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 C16orf92Q96LL3 132 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 NCR2O95944 276 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 FBXL19-AS1Q494R0 122 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 PPP1R14DQ9NXH3 145 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 LMO4P61968 165 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 TWIST1Q15672 202 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 FANCD2OSQ96PS1 177 aa10.79□□□□□ -0.68
CCDC88A-211ENST00000471947 DIRC3C9JPN6 131 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 M0R1W7 72 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 TRBV12-3P01733 135 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 APOHP02749 345 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 PRSS3P2Q8NHM4 247 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 BEX4Q9NWD9 120 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 ATP5G2Q06055 141 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 MRGPRG-AS1Q2M3A8 158 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 AARDQ4LEZ3 155 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 C11orf71Q6IPW1 123 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 PRORYQ9H606 182 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 HAX1O00165 279 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 BMPR1BO00238 502 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 FOXL1Q12952 345 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 ERASQ7Z444 233 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 C14orf144Q96I85 54 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 BBC3Q96PG8 261 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 DUX3Q96PT4 197 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 VGLL1Q99990 258 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 VAMP8Q9BV40 100 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 KLK15Q9H2R5 256 aa10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 RPP21Q9H633 154 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-211ENST00000471947 NDUFS6O75380 124 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 C10orf99Q6UWK7 81 aa10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 Q8N9W7 124 aa10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 ZNF738Q8NE65 137 aa10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 CFHR4Q92496 578 aa10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 TMEM189A5PLL7 270 aa10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 ARMS2P0C7Q2 107 aa10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 SP5Q6BEB4 398 aaPredicted RBP10.77□□□□□ -0.69
CCDC88A-211ENST00000471947 A0A1W2PRX2 142 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 OR11H6Q8NGC7 330 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 OR8A1Q8NGG7 326 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 OSTCQ9NRP0 149 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 FBN2P35556 2912 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 TMEM213A2RRL7 107 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 F6UB75 175 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 S100A4P26447 101 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 ATP5IP56385 69 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 TEP1Q99973 2627 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 A0A1B0GV90 55 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 C9JCJ5 164 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 DDTP30046 118 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 ZNF664Q8N3J9 261 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 ZC2HC1AQ96GY0 325 aa10.76□□□□□ -0.69
CCDC88A-211ENST00000471947 TRAV41A0A0B4J266 112 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 RPL7P18124 248 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 ARL3P36405 182 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 UBE2E1P51965 193 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 WDR73Q6P4I2 378 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 C18orf15Q96N68 181 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 ITPR2Q14571 2701 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 PRAC2D3DTV9 90 aa10.75□□□□□ -0.69
CCDC88A-211ENST00000471947 IGLV2-8P01709 118 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms