RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 KCNIP2Q9NS61 270 aa8.78□□□□□ -1
VPS52-213ENST00000461743 TP53TG1Q9Y2A0 90 aa8.78□□□□□ -1
VPS52-213ENST00000461743 ELOA3CA0A087WX78 387 aaPredicted RBP8.77□□□□□ -1.01
VPS52-213ENST00000461743 LINC00587B1AMM8 73 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 LYL1P12980 280 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 RPL7P18124 248 aaKnown RBP8.77□□□□□ -1.01
VPS52-213ENST00000461743 ADCYAP1P18509 176 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 ID1P41134 155 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 DEFB131AP59861 70 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 TMEM41BQ5BJD5 291 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 APRG1Q8IVJ8 170 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 FAM24BQ8N5W8 94 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 OR5C1Q8NGR4 320 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 THAP6Q8TBB0 222 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 PFDN5Q99471 154 aa8.77□□□□□ -1.01
VPS52-213ENST00000461743 ZNF471Q9BX82 626 aaPredicted RBP8.77□□□□□ -1.01
VPS52-213ENST00000461743 ISLRO14498 428 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 SOCS3O14543 225 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 EIF3GO75821 320 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS52-213ENST00000461743 OR5G3P0C626 314 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 ZNF688P0C7X2 276 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 SPP1P10451 314 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 FGF7P21781 194 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 S100PP25815 95 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 RPL29P47914 159 aaKnown RBP8.76□□□□□ -1.01
VPS52-213ENST00000461743 BLOC1S1P78537 153 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 PRR20EP86478 221 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 PRR20CP86479 221 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 PRR20DP86480 221 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 PRR20BP86481 221 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 PRR20AP86496 221 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 Q6ZRG5 221 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 CBLN2Q8IUK8 224 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 STHQ8IWL8 128 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 OR1L4Q8NGR5 311 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 ARV1Q9H2C2 271 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 OR51M1Q9H341 326 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 SLC25A22Q9H936 323 aa8.76□□□□□ -1.01
VPS52-213ENST00000461743 A0A087X0K7 114 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 COX7A2P2O60397 106 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 TPT1P13693 172 aaKnown RBP8.75□□□□□ -1.01
VPS52-213ENST00000461743 NHLH2Q02577 135 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 PEA15Q15121 130 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 RNF212Q495C1 297 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 PSMG4Q5JS54 123 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 SPATA31B1PQ5VZV4 182 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 TMEM88Q6PEY1 159 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 MORN3Q6PF18 240 aaPredicted RBP8.75□□□□□ -1.01
VPS52-213ENST00000461743 C15orf54Q8N8G6 183 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 RXFP4Q8TDU9 374 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 ATP5SQ99766 215 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 RNF126Q9BV68 326 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 SCRT1Q9BWW7 348 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 NPCDR1Q9BY65 106 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 DOK5Q9P104 306 aa8.75□□□□□ -1.01
VPS52-213ENST00000461743 CSMD3Q7Z407 3707 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 C1orf196B1AJZ1 125 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 RPL12P30050 165 aaKnown RBP8.74□□□□□ -1.01
VPS52-213ENST00000461743 SSTP61278 116 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 C10orf113Q5VZT2 155 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 LEMD1Q68G75 181 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 LINC00305Q7Z4B0 112 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 TRPT1Q86TN4 253 aaKnown RBP8.74□□□□□ -1.01
VPS52-213ENST00000461743 GATAD1Q8WUU5 269 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 RNF141Q8WVD5 230 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 PARD6GQ9BYG4 376 aaPredicted RBP8.74□□□□□ -1.01
VPS52-213ENST00000461743 CSTL1Q9H114 145 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 GSN-AS1Q9NRJ2 163 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 SMCO4Q9NRQ5 59 aa8.74□□□□□ -1.01
VPS52-213ENST00000461743 C5orf52A6NGY3 159 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 C17orf112F2Z3M2 114 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 RPL35AP18077 110 aaKnown RBP8.73□□□□□ -1.01
VPS52-213ENST00000461743 CLINT1Q14677 625 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 ZNF124Q15973 351 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 MIC13Q5XKP0 118 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 LCN15Q6UWW0 184 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 PATE2Q6UY27 113 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 FOXI2Q6ZQN5 318 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 BPIFA4PQ86YQ2 179 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 INO80EQ8NBZ0 244 aaPredicted RBP8.73□□□□□ -1.01
VPS52-213ENST00000461743 CLUHP3Q96NS8 147 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 UHRF2Q96PU4 802 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 WDR61Q9GZS3 305 aaKnown RBP8.73□□□□□ -1.01
VPS52-213ENST00000461743 SLC39A9Q9NUM3 307 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 PXMP4Q9Y6I8 212 aa8.73□□□□□ -1.01
VPS52-213ENST00000461743 HLA-DRB4P13762 266 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 EIF5AP63241 154 aaKnown RBP8.72□□□□□ -1.01
VPS52-213ENST00000461743 DEFB135Q30KP9 77 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 ZNF709Q8N972 641 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 TMEM37Q8WXS4 190 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 RNF183Q96D59 192 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 SAT2Q96F10 170 aaPredicted RBP8.72□□□□□ -1.01
VPS52-213ENST00000461743 C16orf92Q96LL3 132 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 OVOL2Q9BRP0 275 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 RSG1Q9BU20 258 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 EDA2RQ9HAV5 297 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 RETNQ9HD89 108 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 DNAJC4Q9NNZ3 241 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 TREM1Q9NP99 234 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms