RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 LINC00476Q8WZB0 136 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 PFDN5Q99471 154 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 UBE2L5PA0A1B0GUS4 154 aa16.59■□□□□ 0.25
PTPN4-208ENST00000460289 A8MTW9 85 aa16.59■□□□□ 0.25
PTPN4-208ENST00000460289 ZNF705FA8MVS1 300 aaPredicted RBP16.59■□□□□ 0.25
PTPN4-208ENST00000460289 MRPS12O15235 138 aaKnown RBP16.59■□□□□ 0.25
PTPN4-208ENST00000460289 ZNF705DP0CH99 300 aaPredicted RBP16.59■□□□□ 0.25
PTPN4-208ENST00000460289 ZNF705BP0CI00 300 aaPredicted RBP16.59■□□□□ 0.25
PTPN4-208ENST00000460289 CXCL2P19875 107 aa16.59■□□□□ 0.25
PTPN4-208ENST00000460289 CXCL3P19876 107 aa16.59■□□□□ 0.25
PTPN4-208ENST00000460289 ZNF738Q8NE65 137 aa16.59■□□□□ 0.25
PTPN4-208ENST00000460289 GOLT1BQ9Y3E0 138 aa16.59■□□□□ 0.25
PTPN4-208ENST00000460289 SSNA1O43805 119 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 MPDU1O75352 247 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 CNN1P51911 297 aaKnown RBP16.58■□□□□ 0.24
PTPN4-208ENST00000460289 PSG3Q16557 428 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 LRRC37A5PQ49AS3 106 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 LCN15Q6UWW0 184 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 C2CD4CQ8TF44 421 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 SLC39A9Q9NUM3 307 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 DNAH1Q9P2D7 4330 aa16.58■□□□□ 0.24
PTPN4-208ENST00000460289 IGHV3OR16-12A0A075B7B8 117 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 TMEM189A5PLL7 270 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 LY6G6CO95867 125 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 AMBPP02760 352 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 FGF7P21781 194 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 HLA-DMBP28068 263 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 B2MP61769 119 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 OPCMLQ14982 345 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 SLC50A1Q9BRV3 221 aa16.57■□□□□ 0.24
PTPN4-208ENST00000460289 NHLH2Q02577 135 aa16.56■□□□□ 0.24
PTPN4-208ENST00000460289 AMTNQ6UX39 209 aa16.56■□□□□ 0.24
PTPN4-208ENST00000460289 OR5AC2Q9NZP5 309 aa16.56■□□□□ 0.24
PTPN4-208ENST00000460289 H2BFSP57053 126 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 TCTAP57738 103 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 MORN5Q5VZ52 161 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 OR5C1Q8NGR4 320 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 IGF2BP2-AS1Q96M15 143 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 ZNF331Q9NQX6 463 aaPredicted RBP16.55■□□□□ 0.24
PTPN4-208ENST00000460289 RFNGQ9Y644 331 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 PXMP4Q9Y6I8 212 aa16.55■□□□□ 0.24
PTPN4-208ENST00000460289 H0YIZ8 118 aa16.54■□□□□ 0.24
PTPN4-208ENST00000460289 GUK1Q16774 197 aa16.54■□□□□ 0.24
PTPN4-208ENST00000460289 OR11H7Q8NGC8 314 aa16.54■□□□□ 0.24
PTPN4-208ENST00000460289 OR8A1Q8NGG7 326 aa16.54■□□□□ 0.24
PTPN4-208ENST00000460289 PPP1R1CQ8WVI7 109 aa16.54■□□□□ 0.24
PTPN4-208ENST00000460289 TRAV10A0A0B4J240 114 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 HBE1P02100 147 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 PET100P0DJ07 73 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 HIST1H1AQ02539 215 aaPredicted RBP16.53■□□□□ 0.24
PTPN4-208ENST00000460289 Q6ZTC4 211 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 C1orf158Q8N1D5 194 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 RPUSD4Q96CM3 377 aaKnown RBP16.53■□□□□ 0.24
PTPN4-208ENST00000460289 TMEM208Q9BTX3 173 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 NPCDR1Q9BY65 106 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 PPP1R14DQ9NXH3 145 aa16.53■□□□□ 0.24
PTPN4-208ENST00000460289 ALMS1Q8TCU4 4167 aa16.52■□□□□ 0.24
PTPN4-208ENST00000460289 SNRPCP09234 159 aaKnown RBP16.52■□□□□ 0.24
PTPN4-208ENST00000460289 SPART-AS1P0CW21 52 aa16.52■□□□□ 0.24
PTPN4-208ENST00000460289 IGLC2P0DOY2 106 aa16.52■□□□□ 0.24
PTPN4-208ENST00000460289 RHOBP62745 196 aa16.52■□□□□ 0.24
PTPN4-208ENST00000460289 CELA1Q9UNI1 258 aa16.52■□□□□ 0.24
PTPN4-208ENST00000460289 HYDINQ4G0P3 5121 aa16.52■□□□□ 0.23
PTPN4-208ENST00000460289 TRAV5A0A0B4J249 113 aa16.51■□□□□ 0.23
PTPN4-208ENST00000460289 EMP1P54849 157 aa16.51■□□□□ 0.23
PTPN4-208ENST00000460289 SPINK13Q1W4C9 94 aa16.51■□□□□ 0.23
PTPN4-208ENST00000460289 C12orf74Q32Q52 190 aa16.51■□□□□ 0.23
PTPN4-208ENST00000460289 THAP6Q8TBB0 222 aa16.51■□□□□ 0.23
PTPN4-208ENST00000460289 IGLL5B9A064 214 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 H3BQ15 152 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 M0R2Z0 102 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 MPC2O95563 127 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 INSP01308 110 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 CLINT1Q14677 625 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 RRN3P1Q2M238 152 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 LGALS9CQ6DKI2 356 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 SAT2Q96F10 170 aaPredicted RBP16.5■□□□□ 0.23
PTPN4-208ENST00000460289 RNF126Q9BV68 326 aa16.5■□□□□ 0.23
PTPN4-208ENST00000460289 TEX48A0A1B0GUV7 120 aa16.49■□□□□ 0.23
PTPN4-208ENST00000460289 BOLA2-SMG1P6H3BVE0 249 aa16.49■□□□□ 0.23
PTPN4-208ENST00000460289 CRXO43186 299 aaPredicted RBP16.49■□□□□ 0.23
PTPN4-208ENST00000460289 KCNIP2Q9NS61 270 aa16.49■□□□□ 0.23
PTPN4-208ENST00000460289 H3BTX0 84 aa16.48■□□□□ 0.23
PTPN4-208ENST00000460289 WDR61Q9GZS3 305 aaKnown RBP16.48■□□□□ 0.23
PTPN4-208ENST00000460289 TMEM14CQ9P0S9 112 aa16.48■□□□□ 0.23
PTPN4-208ENST00000460289 DEFB131BA0A096LNP1 70 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 LOC102723971A0A1B0GUV8 181 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 C17orf112F2Z3M2 114 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 SLC17A3O00476 420 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 ZNF253O75346 499 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 PTTG1O95997 202 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 ZNF767PQ75MW2 155 aa16.47■□□□□ 0.23
PTPN4-208ENST00000460289 OR10J6PQ8NGY7 276 aa16.46■□□□□ 0.23
PTPN4-208ENST00000460289 ATP5SQ99766 215 aa16.46■□□□□ 0.23
PTPN4-208ENST00000460289 ZNF586Q9NXT0 402 aa16.46■□□□□ 0.23
PTPN4-208ENST00000460289 DKK2Q9UBU2 259 aa16.46■□□□□ 0.23
PTPN4-208ENST00000460289 APLNQ9ULZ1 77 aa16.46■□□□□ 0.23
PTPN4-208ENST00000460289 TRAV12-2A0A075B6T6 113 aa16.45■□□□□ 0.22
PTPN4-208ENST00000460289 HIST1H1EP10412 219 aaKnown RBP16.45■□□□□ 0.22
PTPN4-208ENST00000460289 RPL12P30050 165 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms