RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 COMMD7Q86VX2 200 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 ZNF414Q96IQ9 312 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 TXNDC17Q9BRA2 123 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 AAMDCQ9H7C9 122 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 RBFOX3A6NFN3 312 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 DNASE2O00115 360 aaPredicted RBP10.8□□□□□ -0.68
SKA1-202ENST00000398452 CCL20P78556 96 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 PSG9Q00887 426 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 PDE6HQ13956 83 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 TOR2AQ5JU69 321 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 FXYD5Q96DB9 178 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 FAM210AQ96ND0 272 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 MED9Q9NWA0 146 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 VAX2Q9UIW0 290 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 ARL2-SNX15V9GYD0 113 aa10.8□□□□□ -0.68
SKA1-202ENST00000398452 A0A1W2PRE2 83 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 RAB19A4D1S5 217 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 LINC00862A6NCI5 91 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 PAGE4O60829 102 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 SAP30O75446 220 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 BCL2P10415 239 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 RANP62826 216 aaKnown RBP10.79□□□□□ -0.68
SKA1-202ENST00000398452 PMS2P11Q13670 270 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 CMTM2Q8TAZ6 248 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 GLMPQ8WWB7 406 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 SLC50A1Q9BRV3 221 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 TREM1Q9NP99 234 aa10.79□□□□□ -0.68
SKA1-202ENST00000398452 IGKV3-7A0A075B6H7 116 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 A0A087X0K7 114 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 F6UZH7 168 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 CSN3P07498 182 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 SNRPCP09234 159 aaKnown RBP10.78□□□□□ -0.68
SKA1-202ENST00000398452 IGLC2P0DOY2 106 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 CD33P20138 364 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 ID1P41134 155 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 CSN1S1P47710 185 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 LYPD1Q8N2G4 141 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 SUN5Q8TC36 379 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 ZNF503Q96F45 646 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 C16orf92Q96LL3 132 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 MCRIP2Q9BUT9 160 aaKnown RBP10.78□□□□□ -0.68
SKA1-202ENST00000398452 SMDT1Q9H4I9 107 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 NRN1Q9NPD7 142 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 ZNF586Q9NXT0 402 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 CLEC5AQ9NY25 188 aa10.78□□□□□ -0.68
SKA1-202ENST00000398452 TRBV19A0A075B6N1 114 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 C11orf94C9JXX5 98 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 H3BTX0 84 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 ZNF253O75346 499 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 UQCC3Q6UW78 93 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 LINC00482Q8N8I6 264 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 RXFP4Q8TDU9 374 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 OTORQ9NRC9 128 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 SIGLEC8Q9NYZ4 499 aa10.77□□□□□ -0.69
SKA1-202ENST00000398452 LOC102723971A0A1B0GUV8 181 aa10.76□□□□□ -0.69
SKA1-202ENST00000398452 FAM74A7A6NL05 159 aa10.76□□□□□ -0.69
SKA1-202ENST00000398452 H3BQ15 152 aa10.76□□□□□ -0.69
SKA1-202ENST00000398452 MRPS12O15235 138 aaKnown RBP10.76□□□□□ -0.69
SKA1-202ENST00000398452 SLC25A5P05141 298 aaKnown RBP10.76□□□□□ -0.69
SKA1-202ENST00000398452 SUMO1P63165 101 aaKnown RBP10.76□□□□□ -0.69
SKA1-202ENST00000398452 MEF2BQ02080 365 aaPredicted RBP10.76□□□□□ -0.69
SKA1-202ENST00000398452 ZNF506Q5JVG8 444 aa10.76□□□□□ -0.69
SKA1-202ENST00000398452 Q9H3A6 140 aa10.76□□□□□ -0.69
SKA1-202ENST00000398452 TRAV25A0A0B4J276 109 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 PGPA6NDG6 321 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 K7EQM0 130 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 PDE6DO43924 150 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 EDN2P20800 178 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 INSL3P51460 131 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 C9orf66Q5T8R8 295 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 WFDC3Q8IUB2 231 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 GBGT1Q8N5D6 347 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 OR2K2Q8NGT1 345 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 TCEAL7Q9BRU2 100 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 GPR61Q9BZJ8 451 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 MLXQ9UH92 298 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 PRELID1Q9Y255 219 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 SMAD5-AS1Q9Y6J3 95 aa10.75□□□□□ -0.69
SKA1-202ENST00000398452 OR4C46A6NHA9 309 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 TFPI2P48307 235 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 CEBPGP53567 150 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 SNRPD3P62318 126 aaKnown RBP10.74□□□□□ -0.69
SKA1-202ENST00000398452 ICAM4Q14773 271 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 DEFB114Q30KQ6 69 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 LCN12Q6JVE5 192 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 CITED4Q96RK1 184 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 RARRES2Q99969 163 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 MS4A6AQ9H2W1 248 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 RPH3ALQ9UNE2 315 aa10.74□□□□□ -0.69
SKA1-202ENST00000398452 YTHDF2Q9Y5A9 579 aaKnown RBP10.74□□□□□ -0.69
SKA1-202ENST00000398452 ISLRO14498 428 aa10.73□□□□□ -0.69
SKA1-202ENST00000398452 ATP5G3P48201 142 aa10.73□□□□□ -0.69
SKA1-202ENST00000398452 GUCA2BQ16661 112 aa10.73□□□□□ -0.69
SKA1-202ENST00000398452 C5orf17Q8NAS9 161 aa10.73□□□□□ -0.69
SKA1-202ENST00000398452 RPUSD4Q96CM3 377 aaKnown RBP10.73□□□□□ -0.69
SKA1-202ENST00000398452 C17orf77Q96MU5 243 aa10.73□□□□□ -0.69
SKA1-202ENST00000398452 SPAG8Q99932 426 aaPredicted RBP10.73□□□□□ -0.69
SKA1-202ENST00000398452 ZNF331Q9NQX6 463 aaPredicted RBP10.73□□□□□ -0.69
SKA1-202ENST00000398452 SELENOKQ9Y6D0 94 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms