RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TMEM178BH3BS89 294 aa14.08□□□□□ -0.15
SYNPO-201ENST00000307662 ARHGEF17Q96PE2 2063 aaPredicted RBP14.08□□□□□ -0.16
SYNPO-201ENST00000307662 TIMM21Q9BVV7 248 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 PAX4O43316 350 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 PDE6HQ13956 83 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 RCHY1Q96PM5 261 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 NCOR1P1Q9H4R4 102 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 MYMXA0A1B0GTQ4 84 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 CFHR2P36980 270 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 SLAQ13239 276 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 IGFL4Q6B9Z1 124 aa14.08□□□□□ -0.16
SYNPO-201ENST00000307662 C1orf147Q96MC9 270 aaPredicted RBP14.08□□□□□ -0.16
SYNPO-201ENST00000307662 IGHV1-24A0A0C4DH33 117 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 SMIM27A0A1W2PRY6 76 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 TMEM213A2RRL7 107 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 RSPO3Q9BXY4 272 aaPredicted RBP14.07□□□□□ -0.16
SYNPO-201ENST00000307662 GVINP1Q7Z2Y8 2422 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 TRBV20-1A0A075B6N2 111 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 FAM104BQ5XKR9 115 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 PRSS22Q9GZN4 317 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 C5orf64Q2M2E5 130 aa14.07□□□□□ -0.16
SYNPO-201ENST00000307662 PRSS46E5RG02 174 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 FAM231DQ6ZW35 169 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 HS3ST6Q96QI5 342 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 LINC00527Q9UJ94 153 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 OOSP1A8MZH6 123 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 PPDPFLQ8WWR9 84 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 TRBV7-1A0A0A6YYK4 115 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 IGHV3-73A0A0B4J1V6 119 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 IGKV1-16P04430 117 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 GAGE2AQ6NT46 116 aa14.06□□□□□ -0.16
SYNPO-201ENST00000307662 ZNF48Q96MX3 618 aaPredicted RBP14.06□□□□□ -0.16
SYNPO-201ENST00000307662 LEPROTO15243 131 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 B3GALT5-AS1P59052 145 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 SBF1O95248 1867 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 H3BMM0 161 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 BUB1B-PAK6H3BSN5 160 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 HTN3P15516 51 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 UBE2WQ96B02 151 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 BVES-AS1Q5T3Y7 98 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 C9orf153Q5TBE3 101 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 NEGR1Q7Z3B1 354 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 JPT2Q9H910 190 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 CD59P13987 128 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 ETDBQ3ZM63 59 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 MINOS1Q5TGZ0 78 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 TMEM14BQ9NUH8 114 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 MINOS1-NBL1R4GNA1 71 aa14.05□□□□□ -0.16
SYNPO-201ENST00000307662 CSRP1P21291 193 aaKnown RBP14.04□□□□□ -0.16
SYNPO-201ENST00000307662 NDPQ00604 133 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 LGALS9BQ3B8N2 356 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 LGALS9CQ6DKI2 356 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 VMO1Q7Z5L0 202 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 A0A1W2PRX2 142 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 ZNF672Q499Z4 452 aaPredicted RBP14.04□□□□□ -0.16
SYNPO-201ENST00000307662 Q8N8P6 123 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 ZNF114Q8NC26 417 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 LY6G5BQ8NDX9 201 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 KLF2Q9Y5W3 355 aaPredicted RBP14.04□□□□□ -0.16
SYNPO-201ENST00000307662 A0A1W2PPM0 123 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 SPXQ9BT56 116 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 SRSF8Q9BRL6 282 aaKnown RBP14.04□□□□□ -0.16
SYNPO-201ENST00000307662 LAMTOR3Q9UHA4 124 aa14.04□□□□□ -0.16
SYNPO-201ENST00000307662 ERCC8Q13216 396 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 PRSS57Q6UWY2 283 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 PLXNA3P51805 1871 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 LRRK1Q38SD2 2015 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 CEP250Q9BV73 2442 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 RTTNQ86VV8 2226 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 VWA8A3KMH1 1905 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 RPL36AP83881 106 aaKnown RBP14.03□□□□□ -0.16
SYNPO-201ENST00000307662 KLRD1Q13241 179 aa14.03□□□□□ -0.16
SYNPO-201ENST00000307662 RPL36ALQ969Q0 106 aaKnown RBP14.03□□□□□ -0.16
SYNPO-201ENST00000307662 A0A1W2PPI3 338 aa14.02□□□□□ -0.16
SYNPO-201ENST00000307662 IGKV1-39P01597 117 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 IGKV1D-39P04432 117 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 ZNF415Q09FC8 603 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 Q0VFX4 171 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 LYPD6BQ8NI32 183 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 DNAJC30Q96LL9 226 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 ATP6V0BQ99437 205 aa14.02□□□□□ -0.17
SYNPO-201ENST00000307662 C8orf49Q96NF6 230 aa14.01□□□□□ -0.17
SYNPO-201ENST00000307662 GAGE12HA6NDE8 117 aa14.01□□□□□ -0.17
SYNPO-201ENST00000307662 SLC25A16P16260 332 aa14.01□□□□□ -0.17
SYNPO-201ENST00000307662 ZNF318Q5VUA4 2279 aa14.01□□□□□ -0.17
SYNPO-201ENST00000307662 A0A087WWL8 130 aa14.01□□□□□ -0.17
SYNPO-201ENST00000307662 FCN3O75636 299 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 PRADC1Q9BSG0 188 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 ZNF688P0C7X2 276 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 CDPF1Q6NVV7 123 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 C2orf66Q6UXQ4 117 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 THSD7BQ9C0I4 1608 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14□□□□□ -0.17
SYNPO-201ENST00000307662 TCF15Q12870 199 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 MRPL51Q4U2R6 128 aaKnown RBP14□□□□□ -0.17
SYNPO-201ENST00000307662 PRIMA1Q86XR5 153 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 TMEM141Q96I45 108 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 C11orf52Q96A22 123 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 TP53TG1Q9Y2A0 90 aa14□□□□□ -0.17
SYNPO-201ENST00000307662 NDUFA4L2Q9NRX3 87 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms