RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZNF404Q494X3 552 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 MESTQ5EB52 335 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 C1orf140Q5VVS0 124 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 ZNF322Q6U7Q0 402 aaPredicted RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 KRTAP5-2Q701N4 177 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 DAZ4Q86SG3 579 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 SGPP2Q8IWX5 399 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 ANKRD29Q8N6D5 301 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 TCTEX1D1Q8N7M0 179 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 OR11H7Q8NGC8 314 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 OR51T1Q8NGJ9 327 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 OR2T4Q8NH00 348 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 ZNF418Q8TF45 676 aaPredicted RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 LRRC29Q8WV35 223 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 TMEM106AQ96A25 262 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 Q96M85 177 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 NMNAT3Q96T66 252 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 PSMG3Q9BT73 122 aaPredicted RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 TMEM147Q9BVK8 224 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 SAMD10Q9BYL1 202 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 OR2D2Q9H210 308 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 PROK2Q9HC23 129 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 DAZ1Q9NQZ3 744 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 RBFOX1Q9NWB1 397 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 NDUFB11Q9NX14 153 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 ZNF230Q9UIE0 474 aaPredicted RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 HIGD1AQ9Y241 93 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 NUP214P35658 2090 aaPredicted RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 AHCTF1Q8WYP5 2266 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 A0A0C4DFX4 3053 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 RIF1Q5UIP0 2472 aaKnown RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 FANCMQ8IYD8 2048 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TRAV30A0A087WSZ9 112 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TRAV8-3A0A0A6YYJ7 113 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TRAV8-1A0A0A6YYK1 113 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TRAV5A0A0B4J249 113 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 A0A0J9YXV3 536 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 PNMA8CA0A1B0GUJ8 204 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 CIB4A0PJX0 185 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 IFITM5A6NNB3 132 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 CD300LBA8K4G0 201 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TMEM250H0YL14 139 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 J3QRK9 145 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 ZNF207O43670 478 aaKnown RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 OR7C2O60412 319 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 OR2H2O95918 312 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 IFNA7P01567 189 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TRBV12-3P01733 135 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 SOD3P08294 240 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 SPTBP11277 2137 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 CCL1P22362 96 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 CXCL5P42830 114 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 SYNJ2BPP57105 145 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 IFITM3Q01628 133 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 ERCC8Q13216 396 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 EIF3IQ13347 325 aaKnown RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 INSL4Q14641 139 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TMEM183BQ1AE95 376 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 LINC01590Q5TEZ4 76 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 FAM222AQ5U5X8 452 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 RPS19BP1Q86WX3 136 aaKnown RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 ZNF695Q8IW36 515 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TMEM183AQ8IXX5 376 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TCTE3Q8IZS6 198 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 ZCCHC24Q8N2G6 241 aaKnown RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 C12orf45Q8N5I9 185 aaPredicted RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 Q8N976 141 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 ZIC4Q8N9L1 334 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 DEFB124Q8NES8 71 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 OR2M3Q8NG83 312 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 OR13C8Q8NGS7 320 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 OR5H6Q8NGV6 325 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 OR2G3Q8NGZ4 309 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 PSMF1Q92530 271 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 SLC25A44Q96H78 314 aaPredicted RBP2.94□□□□□ -1.94
NUP88-213ENST00000576862 SMIM8Q96KF7 97 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 SPACA5Q96QH8 159 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 TTTY10Q9BZA0 68 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 LINC00527Q9UJ94 153 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 INSIG2Q9Y5U4 225 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 CEP295Q9C0D2 2601 aa2.94□□□□□ -1.94
NUP88-213ENST00000576862 RP1P56715 2156 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 TMEM131Q92545 1883 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 IGHV2-26A0A0B4J1V2 119 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 TRAV4A0A0B4J268 109 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 IGHV1-69DA0A0B4J2H0 117 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 TRDV1A0A1B0GX56 115 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 TMEM218A2RU14 115 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 ZNF670-ZNF695F2Z2N8 137 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 H3BP45 60 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 J3QR89 54 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 OVOL1O14753 267 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 RBFOX2O43251 390 aaKnown RBP eCLIP2.93□□□□□ -1.94
NUP88-213ENST00000576862 CD5LO43866 347 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 OR2T1O43869 369 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 BCL2P10415 239 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 RPS27P42677 84 aaKnown RBP2.93□□□□□ -1.94
NUP88-213ENST00000576862 TAS2R20P59543 309 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 BTN1A1Q13410 526 aa2.93□□□□□ -1.94
NUP88-213ENST00000576862 RHEBQ15382 184 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 167.8 ms