RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TET2Q6N021 2002 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-203ENST00000547825 IGLV3-12A0A075B6K2 115 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 NPIPB5A8MRT5 1133 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 AHRRA9YTQ3 701 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 LCNL1Q6ZST4 164 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 SYT8Q8NBV8 401 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 SNRNP40Q96DI7 357 aaKnown RBP4.47□□□□□ -1.69
LIMA1-203ENST00000547825 PRR25Q96S07 402 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 MGST2Q99735 147 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 ZPBPQ9BS86 351 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 KIR2DS2P43631 304 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 CACNG7P62955 275 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 C11orf1Q9H5F2 150 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 INSIG2Q9Y5U4 225 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 IGHV3-49A0A0A0MS15 119 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 TMEM189A5PLL7 270 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 ZNF716A6NP11 495 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 NKX2-8O15522 239 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 NPPCP23582 126 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 LRRC10Q5BKY1 277 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 LINC01356Q8N9X3 169 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 ORAOV1Q8WV07 137 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 BEX4Q9NWD9 120 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-203ENST00000547825 ONECUT1Q9UBC0 465 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 HIGD1AQ9Y241 93 aa4.47□□□□□ -1.69
LIMA1-203ENST00000547825 C15orf62A8K5M9 175 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 SMIM13P0DJ93 91 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 HTN1P15515 57 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 GUSBP1Q15486 140 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 ZNF497Q6ZNH5 498 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 MYOZ3Q8TDC0 251 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 RNF7Q9UBF6 113 aa4.46□□□□□ -1.69
LIMA1-203ENST00000547825 CHD6Q8TD26 2715 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 FAM208BQ5VWN6 2430 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 PINLYPA6NC86 204 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 PTGDSP41222 190 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 CLDN18P56856 261 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 CX3CL1P78423 397 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 PSG9Q00887 426 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 SLAQ13239 276 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 PRSS57Q6UWY2 283 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 FAM216BQ8N7L0 139 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 FADS6Q8N9I5 356 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 NUP35Q8NFH5 326 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 STXBP6Q8NFX7 210 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 OR1N2Q8NGR9 330 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 VSTM2AQ8TAG5 236 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 GRAMD2BQ96HH9 432 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 OSTCQ9NRP0 149 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 TP73-AS1Q9UF72 201 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 A0A1B0GUT8 65 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 A0A1B0GV72 72 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 APOMO95445 188 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 MGPP08493 103 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 TNFRSF1AP19438 455 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 RPL27AP46776 148 aaKnown RBP4.46□□□□□ -1.7
LIMA1-203ENST00000547825 VWC2Q2TAL6 325 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 SPANXN1Q5VSR9 72 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 ACP7Q6ZNF0 438 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF788Q6ZQV5 615 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 SLC25A33Q9BSK2 321 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 IFI27L2Q9H2X8 130 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 ZNRD1Q9P1U0 126 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 CSMD2Q7Z408 3487 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 ACACBO00763 2458 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 SORL1Q92673 2214 aa4.46□□□□□ -1.7
LIMA1-203ENST00000547825 TRAV30A0A087WSZ9 112 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 IGHV1-69-2A0A0G2JMI3 117 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 C17orf100A8MU93 164 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 IGHV3-23P01764 117 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 DUTP33316 252 aaKnown RBP4.45□□□□□ -1.7
LIMA1-203ENST00000547825 SELENOTP62341 195 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 IGFL2Q6UWQ7 119 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 CIARTQ8N365 385 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-203ENST00000547825 OR52E5Q8NH55 327 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 PRELID3AQ96N28 172 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 GPR82Q96P67 336 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 ANKRD11Q6UB99 2663 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-203ENST00000547825 IGHV3-66A0A0C4DH42 116 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 FAM231BA6NCW3 169 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 TRIAP1O43715 76 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 SAP30O75446 220 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 NCR2O95944 276 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 IGLV3-1P01715 115 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 PRSS2P07478 247 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 SLURP1P55000 103 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 SRSF6Q13247 344 aaKnown RBP4.45□□□□□ -1.7
LIMA1-203ENST00000547825 OR10J3Q5JRS4 329 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 TMEM144Q7Z5S9 345 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 C18orf32Q8TCD1 76 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 RPP21Q9H633 154 aaKnown RBP4.45□□□□□ -1.7
LIMA1-203ENST00000547825 PEMTQ9UBM1 199 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 PPIAL4EA0A075B759 164 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 LOC102723996A0A087X1L8 192 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 A0A0G2JLM5 398 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 SYS1-DBNDD2H3BUS1 97 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 PPIAL4FP0DN26 164 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 CCL3L1P16619 93 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 TMEM186Q96B77 213 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 IMMP1LQ96LU5 166 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms