RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	TIMM23	O14925	209 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	SLA	Q13239	276 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	LY6D	Q14210	128 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	TIGIT	Q495A1	244 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	FXYD5	Q96DB9	178 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	OSTC	Q9NRP0	149 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	MRPL27	Q9P0M9	148 aa	Known RBP	11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	CENPE	Q02224	2701 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286		A0A1W2PPR1	153 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286		M0R2Z0	102 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	TAX1BP3	O14907	124 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	ZNF137P	P52743	207 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	IGF2BP2-AS1	Q96M15	143 aa		11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	11.76	□□□□□ -0.53
DDX55-209	ENST00000542286	IBA57	Q5T440	356 aa	Known RBP	11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	ZNF329	Q86UD4	541 aa		11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	PPP1R27	Q86WC6	154 aa		11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	MC5R	P33032	325 aa		11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	SUB1	P53999	127 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	OR8B3	Q8NGG8	313 aa		11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	OR8B2	Q96RD0	313 aa		11.75	□□□□□ -0.53
DDX55-209	ENST00000542286	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	OR2T8	A6NH00	312 aa		11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	TEX22	C9J3V5	150 aa		11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	UBE2G1	P62253	170 aa		11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	SPOCK3	Q9BQ16	436 aa		11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	ZNF331	Q9NQX6	463 aa	Predicted RBP	11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	MSRB2	Q9Y3D2	182 aa		11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	AMMECR1L	Q6DCA0	310 aa		11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	BCL6B	Q8N143	479 aa	Predicted RBP	11.74	□□□□□ -0.53
DDX55-209	ENST00000542286	SRSF12	Q8WXF0	261 aa	Known RBP	11.74	□□□□□ -0.53
DDX55-209	ENST00000542286		A0A1W2PRE2	83 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	SMIM27	A0A1W2PRY6	76 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	C2orf70	A6NJV1	201 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	NUDT3	O95989	172 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	CRYGB	P07316	175 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	LGALS7	P47929	136 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	RPS20	P60866	119 aa	Known RBP	11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	LYZ	P61626	148 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	SPATA12	Q7Z6I5	190 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	OR4A5	Q8NH83	315 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	TRAV8-1	A0A0A6YYK1	113 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	CNIH1	O95406	144 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	RBP4	P02753	201 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	PIEZO1	Q92508	2521 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	PGP	A6NDG6	321 aa		11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	RNASEK	Q6P5S7	137 aa	Known RBP	11.73	□□□□□ -0.53
DDX55-209	ENST00000542286	ZFYVE26	Q68DK2	2539 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	IZUMO1R	A6ND01	250 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	PEX7	O00628	323 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	SLC25A5	P05141	298 aa	Known RBP	11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	HES1	Q14469	280 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	LINC00322	Q6ZN03	302 aa	Predicted RBP	11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	C8orf31	Q8N9H6	132 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	THAP8	Q8NA92	274 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	MRPL32	Q9BYC8	188 aa	Known RBP	11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	FAM71F2	Q6NXP2	309 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	DYNAP	Q8N1N2	210 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	NUDT11	Q96G61	164 aa		11.72	□□□□□ -0.53
DDX55-209	ENST00000542286	IGHV3-23	P01764	117 aa		11.71	□□□□□ -0.53
DDX55-209	ENST00000542286	BVES-AS1	Q5T3Y7	98 aa		11.71	□□□□□ -0.53
DDX55-209	ENST00000542286	TEX45	Q8NA69	505 aa		11.71	□□□□□ -0.53
DDX55-209	ENST00000542286	C17orf77	Q96MU5	243 aa		11.71	□□□□□ -0.53
DDX55-209	ENST00000542286	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.71	□□□□□ -0.53
DDX55-209	ENST00000542286	CLEC5A	Q9NY25	188 aa		11.71	□□□□□ -0.53
DDX55-209	ENST00000542286	MUC21	A0A0G2JKD1	596 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	MUC21	A0A140T8X8	626 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	INS-IGF2	F8WCM5	200 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	MUC21	Q5SSG8	566 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	EXOC3-AS1	Q8N2X6	119 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	DEFB125	Q8N687	156 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	OR1L4	Q8NGR5	311 aa		11.71	□□□□□ -0.54
DDX55-209	ENST00000542286	IGHV3OR16-8	A0A075B7F1	116 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	GAGE12B	A1L429	117 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	OR4C46	A6NHA9	309 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	TMEM238	C9JI98	176 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286		K7ERU9	68 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	GPR6	P46095	362 aa	Predicted RBP	11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	ATP5I	P56385	69 aa	Predicted RBP	11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	ARL2-SNX15	V9GYD0	113 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	CRYGC	P07315	174 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	GDF5OS	Q5U4N7	250 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	TMEM70	Q9BUB7	260 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	C19orf24	Q9BVV8	132 aa		11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	F11R	Q9Y624	299 aa	Known RBP	11.7	□□□□□ -0.54
DDX55-209	ENST00000542286	VWC2L	B2RUY7	222 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	NBEAP1	P0C6P0	100 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	NHLH1	Q02575	133 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	hDV102S1	A0JD36	115 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	TMEM11	P17152	192 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	CAMP	P49913	170 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	ST20	Q9HBF5	79 aa		11.69	□□□□□ -0.54
DDX55-209	ENST00000542286	LY6L	H3BQJ8	138 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	LIPF	P07098	398 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	PSG9	Q00887	426 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	KLRB1	Q12918	225 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	TCF24	Q7RTU0	167 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	IGHV3-35	A0A0C4DH35	117 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	IGLC1	P0CG04	106 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	ZFP36	P26651	326 aa	Known RBP	11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms