RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	OR13C9	Q8NGT0	318 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	OR4X1	Q8NH49	305 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	ATP6V0E2	Q8NHE4	81 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	GPR148	Q8TDV2	347 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	TNFAIP8L1	Q8WVP5	186 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	PHYHIP	Q92561	330 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	LEAP2	Q969E1	77 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	TMEM203	Q969S6	136 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	SLC25A46	Q96AG3	418 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	SLC25A38	Q96DW6	304 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	CMTM5	Q96DZ9	223 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	RAB3C	Q96E17	227 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	TPD52L3	Q96J77	140 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	TMEM56	Q96MV1	263 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	METTL26	Q96S19	204 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	KIR2DL4	Q99706	377 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	TXNDC17	Q9BRA2	123 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	0.9	□□□□□ -2.27
CD44-212	ENST00000524922	PARP12	Q9H0J9	701 aa	Known RBP	0.9	□□□□□ -2.27
CD44-212	ENST00000524922	NDUFA4L2	Q9NRX3	87 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	SDHAF2	Q9NX18	166 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	ZNF586	Q9NXT0	402 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	NKIRAS1	Q9NYS0	192 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	TVP23B	Q9NYZ1	205 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	LINC00474	Q9P2X8	69 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	CKLF	Q9UBR5	152 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	PRO0255	Q9UI72	69 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	IKZF2	Q9UKS7	526 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	PRND	Q9UKY0	176 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	ING4	Q9UNL4	249 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	CARHSP1	Q9Y2V2	147 aa	Known RBP	0.9	□□□□□ -2.27
CD44-212	ENST00000524922	ICOS	Q9Y6W8	199 aa		0.9	□□□□□ -2.27
CD44-212	ENST00000524922	PIGBOS1	A0A0B4J2F0	54 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922		A0A0J9YX75	114 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	IRGM	A1A4Y4	181 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	TMEM14DP	A8MWL7	114 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	HMGB1P1	B2RPK0	211 aa	Predicted RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	TRDC	B7Z8K6	153 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922		H3BN98	237 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ZNF701	M0R085	212 aa	Predicted RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922		M0R1X1	148 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	DEFB4A	O15263	64 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SOCS1	O15524	211 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ST8SIA3	O43173	380 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ZNF324	O75467	553 aa	Predicted RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	CLN5	O75503	358 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SHBG	P04278	402 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	CRYGD	P07320	174 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	HTR1A	P08908	422 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SNRPC	P09234	159 aa	Known RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	RPA2	P15927	270 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	CEACAM6	P40199	344 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	P2RY1	P47900	373 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	CCR6	P51684	374 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	POLR2G	P62487	172 aa	Known RBP eCLIP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	VSNL1	P62760	191 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SUPT4H1	P63272	117 aa	Known RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	WT1-AS	Q06250	92 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	IFFO1	Q0D2I5	559 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922		Q0VG73	95 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	CATR1	Q13166	79 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR2F1	Q13607	317 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	GNMT	Q14749	295 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ZNF846	Q147U1	533 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	MEF2D	Q14814	521 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922		Q499Y3	187 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ACTL10	Q5JWF8	245 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	C1orf100	Q5SVJ3	147 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	C12orf73	Q69YU5	71 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR2T5	Q6IEZ7	315 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ETFRF1	Q6IPR1	90 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	STEAP1B	Q6NZ63	245 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	EBLN2	Q6P2I7	272 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	RPL22L1	Q6P5R6	122 aa	Known RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	TOMM20L	Q6UXN7	152 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SSX6	Q7RTT6	188 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	PRSS48	Q7RTY5	328 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	NEGR1	Q7Z3B1	354 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	AQP12A	Q8IXF9	295 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	C1orf158	Q8N1D5	194 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	ACBD7	Q8N6N7	88 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR10G2	Q8NGC3	310 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR1S2	Q8NGQ3	325 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR1L8	Q8NGR8	309 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR2T29	Q8NH02	315 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	OR10J5	Q8NHC4	309 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922		Q8TAT8	98 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	CASTOR1	Q8WTX7	329 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	C7orf33	Q8WU49	177 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	FCGR1B	Q92637	280 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	IL22RA2	Q969J5	263 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	FAM162A	Q96A26	154 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	FGGY	Q96C11	551 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SMIM19	Q96E16	107 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	NSMCE2	Q96MF7	247 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	IL4I1	Q96RQ9	567 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	SLC29A1	Q99808	456 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	KCTD14	Q9BQ13	255 aa	Predicted RBP	0.89	□□□□□ -2.27
CD44-212	ENST00000524922	TMEM59	Q9BXS4	323 aa		0.89	□□□□□ -2.27
CD44-212	ENST00000524922	COMMD5	Q9GZQ3	224 aa		0.89	□□□□□ -2.27

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