RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	SFTA2	Q6UW10	78 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	OR11H1	Q8NG94	326 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	CGB3	P0DN86	165 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	ATP5L	O75964	103 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	SOD3	P08294	240 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	COPS9	Q8WXC6	57 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	MT-ND6	P03923	174 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	RNF166	Q96A37	237 aa	Predicted RBP	11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	NUDT11	Q96G61	164 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	ZMAT4	Q9H898	229 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	APOM	O95445	188 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144		A0A096LPF7	62 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144		Q6P435	159 aa		11.72	□□□□□ -0.53
TRIO-222	ENST00000515144	TMEM250	H0YL14	139 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	NUDT10	Q8NFP7	164 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	PSMG3	Q9BT73	122 aa	Predicted RBP	11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	IGHV2-70D	A0A0C4DH43	119 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	IFI27	P40305	119 aa	Predicted RBP	11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	JOSD1	Q15040	202 aa	Predicted RBP	11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	FAM120AOS	Q5T036	256 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	SPATA31B1P	Q5VZV4	182 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	GFI1	Q99684	422 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	TRGV11	A0A075B6L2	103 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	NMB	P08949	121 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	PAPPA-AS1	Q5QFB9	102 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	SPSB3	Q6PJ21	355 aa		11.71	□□□□□ -0.53
TRIO-222	ENST00000515144	STPG2	Q8N412	459 aa		11.71	□□□□□ -0.54
TRIO-222	ENST00000515144	COQ2	Q96H96	371 aa		11.71	□□□□□ -0.54
TRIO-222	ENST00000515144	DEFB136	Q30KP8	78 aa		11.71	□□□□□ -0.54
TRIO-222	ENST00000515144	SMDT1	Q9H4I9	107 aa		11.71	□□□□□ -0.54
TRIO-222	ENST00000515144	IL36B	Q9NZH7	164 aa		11.71	□□□□□ -0.54
TRIO-222	ENST00000515144	LINC01619	G3V211	115 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	DTX1	Q86Y01	620 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	ORMDL3	Q8N138	153 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	RHPN1-AS1	Q9BWJ2	59 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	PROK2	Q9HC23	129 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144		J3QRE1	110 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	HS3ST6	Q96QI5	342 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	ATRX	P46100	2492 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	MGST2	Q99735	147 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	PMCHL2	Q9BQD1	86 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	SPINK13	Q1W4C9	94 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	CIART	Q8N365	385 aa	Predicted RBP	11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	USMG5	Q96IX5	58 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144		A0A087WWL8	130 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	DEFB113	Q30KQ7	82 aa		11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	PUSL1	Q8N0Z8	303 aa	Known RBP	11.7	□□□□□ -0.54
TRIO-222	ENST00000515144	MRPS16	Q9Y3D3	137 aa	Known RBP	11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	RFNG	Q9Y644	331 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	LCN12	Q6JVE5	192 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	IGFL3	Q6UXB1	125 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	ZNF503-AS2	A6NEH8	195 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	FAM223B	A6NKX1	122 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	FAM223A	Q8IWN6	122 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	DKK1	O94907	266 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	VSIR	Q9H7M9	311 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	SON	P18583	2426 aa	Known RBP	11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	GATA3	P23771	443 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	COTL1	Q14019	142 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	C14orf144	Q96I85	54 aa		11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	MRPL16	Q9NX20	251 aa	Known RBP	11.69	□□□□□ -0.54
TRIO-222	ENST00000515144	TRAV8-1	A0A0A6YYK1	113 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	HOXA5	P20719	270 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	TRAV12-2	A0A075B6T6	113 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	OVOL1	O14753	267 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	EML5	Q05BV3	1969 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	UBE2E1	P51965	193 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	TMEM155	Q4W5P6	130 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	LINC00158	P58513	81 aa		11.68	□□□□□ -0.54
TRIO-222	ENST00000515144	KNCN	A6PVL3	124 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144		E9PQ18	207 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	TDGF1P3	P51864	188 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	DAD1	P61803	113 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	KLK9	Q9UKQ9	250 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	TTC28	Q96AY4	2481 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	NCR2	O95944	276 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	TCTEX1D4	Q5JR98	221 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	RNF126	Q9BV68	326 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	INS	P01308	110 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	TMEM95	Q3KNT9	176 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	SORL1	Q92673	2214 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	PRTN3	P24158	256 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	CFHR2	P36980	270 aa		11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	SDHC	Q99643	169 aa	Predicted RBP	11.67	□□□□□ -0.54
TRIO-222	ENST00000515144	IGHV4-59	P01825	116 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	NXT2	Q9NPJ8	142 aa	Known RBP	11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	FAM215A	Q9Y5M1	114 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	CSPG4	Q6UVK1	2322 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	IGHV4-39	P01824	125 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	HIST2H2BC	Q6DN03	193 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	IGHV4-30-2	A0A087WSY4	118 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	CGB7	P0DN87	165 aa		11.66	□□□□□ -0.54
TRIO-222	ENST00000515144	ZNF815P	A8K554	130 aa		11.65	□□□□□ -0.54
TRIO-222	ENST00000515144	SLC25A20	O43772	301 aa		11.65	□□□□□ -0.54
TRIO-222	ENST00000515144	ZNF876P	Q49A33	203 aa		11.65	□□□□□ -0.54
TRIO-222	ENST00000515144	C1QL4	Q86Z23	238 aa		11.65	□□□□□ -0.54
TRIO-222	ENST00000515144	CMC4	P56277	68 aa	Predicted RBP	11.65	□□□□□ -0.54
TRIO-222	ENST00000515144	ERAS	Q7Z444	233 aa		11.65	□□□□□ -0.54
TRIO-222	ENST00000515144	OR11H2	Q8NH07	326 aa		11.65	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms