RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 RPRMQ9NS64 109 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 UFC1Q9Y3C8 167 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 RD3LP0DJH9 198 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 PSG1P11464 419 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 GATA2P23769 480 aaPredicted RBP13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 BLOC1S1P78537 153 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 RELQ04864 619 aaPredicted RBP13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 TM4SF20Q53R12 229 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 UNQ9165/PRO28630Q6UXU0 137 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 ZNF600Q6ZNG1 722 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 TMEM61Q8N0U2 210 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 OR1L4Q8NGR5 311 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 MARC2Q969Z3 335 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 RNF2Q99496 336 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 WFDC10AQ9H1F0 79 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 VSIRQ9H7M9 311 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 EDA2RQ9HAV5 297 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 MLXQ9UH92 298 aa13.51□□□□□ -0.25
SQSTM1-209ENST00000504627 RBPMS2Q6ZRY4 209 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 OR10G4Q8NGN3 311 aa13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 OR10G9Q8NGN4 311 aa13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 OR10G7Q8NGN6 311 aa13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 Q8WTZ3 238 aa13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 GATAD1Q8WUU5 269 aa13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 CHRDL1Q9BU40 450 aa13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 MRPL32Q9BYC8 188 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 MRPL27Q9P0M9 148 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-209ENST00000504627 ELOA3CA0A087WX78 387 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 CTXND1A0A1B0GTU2 59 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 COX7A2P2O60397 106 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 OR5G3P0C626 314 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 CDC34P49427 236 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 FHITP49789 147 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 RHOBP62745 196 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 GCSAMLQ5JQS6 135 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 LINC00322Q6ZN03 302 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 RPP25LQ8N5L8 163 aaKnown RBP13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 RNF125Q96EQ8 232 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 ACTR3CQ9C0K3 210 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 RETNQ9HD89 108 aa13.49□□□□□ -0.25
SQSTM1-209ENST00000504627 LYZP61626 148 aa13.48□□□□□ -0.25
SQSTM1-209ENST00000504627 FAM122CQ6P4D5 195 aa13.48□□□□□ -0.25
SQSTM1-209ENST00000504627 SLC25A22Q9H936 323 aa13.48□□□□□ -0.25
SQSTM1-209ENST00000504627 TRAV25A0A0B4J276 109 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 RBMY1BA6NDE4 496 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 RBMY1EA6NEQ0 496 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 HYPMO75409 117 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 HBE1P02100 147 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 IL4P05112 153 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 RBMY1DP0C7P1 496 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 C8orf88P0DMB2 117 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 ZNF726P1Q15940 193 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 C10orf113Q5VZT2 155 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 S100A7AQ86SG5 101 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 OR1B1Q8NGR6 318 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 ZNF414Q96IQ9 312 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 FAM110AQ9BQ89 295 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 DNAJC4Q9NNZ3 241 aa13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 PUS1Q9Y606 427 aaKnown RBP eCLIP13.47□□□□□ -0.25
SQSTM1-209ENST00000504627 TRAV1-1A0A0B4J248 108 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 A0A1W2PPV4 95 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 MAP1LC3B2A6NCE7 125 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 TEX46H3BTG2 121 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 H2AFB1P0C5Y9 115 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 S100A7P31151 101 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 LYPD6BQ8NI32 183 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 PCNPQ8WW12 178 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 MBD3L1Q8WWY6 194 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 TMEM37Q8WXS4 190 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 TMEM190Q8WZ59 177 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 C20orf24Q9BUV8 137 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 MAP1LC3BQ9GZQ8 125 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 ZFAND3Q9H8U3 227 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 DAZ1Q9NQZ3 744 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 DOK5Q9P104 306 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 FUT9Q9Y231 359 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 HIGD1AQ9Y241 93 aa13.46□□□□□ -0.25
SQSTM1-209ENST00000504627 DYNC2H1Q8NCM8 4307 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 NDUFA4O00483 81 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 ORM2P19652 201 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 TAS2R45P59539 299 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 FAM78BQ5VT40 261 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 TOMM20LQ6UXN7 152 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 RAB24Q969Q5 203 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 PBDC1Q9BVG4 233 aa13.45□□□□□ -0.26
SQSTM1-209ENST00000504627 USF2Q15853 346 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-209ENST00000504627 PATE2Q6UY27 113 aa13.44□□□□□ -0.26
SQSTM1-209ENST00000504627 SSX7Q7RTT5 188 aa13.44□□□□□ -0.26
SQSTM1-209ENST00000504627 SEPSECSQ9HD40 501 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-209ENST00000504627 RNF24Q9Y225 148 aa13.44□□□□□ -0.26
SQSTM1-209ENST00000504627 H3BRN7 92 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 STAG3L2P0CL84 134 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 STAG3L3P0CL85 134 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 KHDC3LQ587J8 217 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 SPATA31B1PQ5VZV4 182 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 LCN15Q6UWW0 184 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 MIR17HGQ75NE6 70 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 LINC00305Q7Z4B0 112 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 SFT2D1Q8WV19 159 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 SPAG8Q99932 426 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms