RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 M0R036 132 aa10.88□□□□□ -0.67
SS18-201ENST00000269137 IGHV3-11P01762 117 aa10.88□□□□□ -0.67
SS18-201ENST00000269137 BPIFA4PQ86YQ2 179 aa10.88□□□□□ -0.67
SS18-201ENST00000269137 COLCA2A8K830 154 aa10.87□□□□□ -0.67
SS18-201ENST00000269137 TRBV12-3P01733 135 aa10.87□□□□□ -0.67
SS18-201ENST00000269137 NBEAP1P0C6P0 100 aa10.87□□□□□ -0.67
SS18-201ENST00000269137 HIST1H1EP10412 219 aaKnown RBP10.87□□□□□ -0.67
SS18-201ENST00000269137 CEBPGP53567 150 aa10.87□□□□□ -0.67
SS18-201ENST00000269137 FLI1Q01543 452 aaPredicted RBP10.87□□□□□ -0.67
SS18-201ENST00000269137 RHEBQ15382 184 aa10.87□□□□□ -0.67
SS18-201ENST00000269137 CLPSL1A2RUU4 121 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 NDUFA4O00483 81 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 MRPS12O15235 138 aaKnown RBP10.86□□□□□ -0.67
SS18-201ENST00000269137 RPLP1P05386 114 aaKnown RBP10.86□□□□□ -0.67
SS18-201ENST00000269137 NPPCP23582 126 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 AKR1C3P42330 323 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 C15orf54Q8N8G6 183 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 C11orf52Q96A22 123 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 JMJD8Q96S16 334 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 C20orf24Q9BUV8 137 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 TUBA4BQ9H853 241 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 PEF1Q9UBV8 284 aaKnown RBP10.86□□□□□ -0.67
SS18-201ENST00000269137 GGTLC3B5MD39 225 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 GGCTO75223 188 aaKnown RBP10.86□□□□□ -0.67
SS18-201ENST00000269137 UBE2E2Q96LR5 201 aa10.86□□□□□ -0.67
SS18-201ENST00000269137 H3BQ15 152 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 CRYBA1P05813 215 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 IGLC2P0DOY2 106 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 MYCNOSP40205 109 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 KLHDC1Q8N7A1 406 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 OR4F17Q8NGA8 305 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 TMEM190Q8WZ59 177 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 METTL26Q96S19 204 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 TCEAL7Q9BRU2 100 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 NIPSNAP3BQ9BS92 247 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 C16orf95Q9H693 158 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 MLXQ9UH92 298 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 U3KQE9 123 aa10.85□□□□□ -0.67
SS18-201ENST00000269137 ZNF727A8MUV8 499 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 INAFM1C9JVW0 142 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 RPL7P18124 248 aaKnown RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 CRYBB3P26998 211 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 SUMO1P63165 101 aaKnown RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 C1orf194Q5T5A4 169 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 RPUSD4Q96CM3 377 aaKnown RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 SMIM7Q9BQ49 75 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 PARLQ9H300 379 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 ZNF586Q9NXT0 402 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 IGHV3OR16-8A0A075B7F1 116 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 SCO2A0A1W2PP80 73 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 BUB3O43684 328 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 NDUFB4O95168 129 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 LGALS1P09382 135 aaKnown RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 FOLR2P14207 255 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 WIPF2Q8TF74 440 aaPredicted RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 BLNKQ8WV28 456 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 ELOVL1Q9BW60 279 aa10.84□□□□□ -0.67
SS18-201ENST00000269137 SETXQ7Z333 2677 aaKnown RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 FN1P02751 2386 aaKnown RBP10.84□□□□□ -0.67
SS18-201ENST00000269137 RANP62826 216 aaKnown RBP10.83□□□□□ -0.68
SS18-201ENST00000269137 Q71RC1 249 aaPredicted RBP10.83□□□□□ -0.68
SS18-201ENST00000269137 OR8I2Q8N0Y5 310 aa10.83□□□□□ -0.68
SS18-201ENST00000269137 HIST1H2BAQ96A08 127 aa10.83□□□□□ -0.68
SS18-201ENST00000269137 TVP23CQ96ET8 276 aa10.83□□□□□ -0.68
SS18-201ENST00000269137 GPR82Q96P67 336 aa10.83□□□□□ -0.68
SS18-201ENST00000269137 F8P00451 2351 aa10.83□□□□□ -0.68
SS18-201ENST00000269137 TRBV19A0A075B6N1 114 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 PNRC1Q12796 327 aaPredicted RBP10.82□□□□□ -0.68
SS18-201ENST00000269137 PDE6HQ13956 83 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 ZNF674Q2M3X9 581 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 UNQ9165/PRO28630Q6UXU0 137 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 GPHB5Q86YW7 130 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 OR5B12Q96R08 314 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 SDF2L1Q9HCN8 221 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 NAT8Q9UHE5 227 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 CUBNO60494 3623 aa10.82□□□□□ -0.68
SS18-201ENST00000269137 SETD2Q9BYW2 2564 aaPredicted RBP10.82□□□□□ -0.68
SS18-201ENST00000269137 NDUFA7O95182 113 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 MT-ND4LP03901 98 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 SNRPCP09234 159 aaKnown RBP10.81□□□□□ -0.68
SS18-201ENST00000269137 CDX1P47902 265 aaPredicted RBP10.81□□□□□ -0.68
SS18-201ENST00000269137 TMEM241Q24JQ0 296 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 RNF212Q495C1 297 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 LYPD1Q8N2G4 141 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 C2CD4CQ8TF44 421 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 OTORQ9NRC9 128 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 PGPA6NDG6 321 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 FAM106AQ4KMX7 169 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 TCTEX1D4Q5JR98 221 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 WFDC12Q8WWY7 111 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 ISOC2Q96AB3 205 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 DERL1Q9BUN8 251 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 Q9H3A6 140 aa10.81□□□□□ -0.68
SS18-201ENST00000269137 A0A087WWC5 75 aa10.8□□□□□ -0.68
SS18-201ENST00000269137 H3BTX0 84 aa10.8□□□□□ -0.68
SS18-201ENST00000269137 K7EMT4 169 aa10.8□□□□□ -0.68
SS18-201ENST00000269137 C5orf17Q8NAS9 161 aa10.8□□□□□ -0.68
SS18-201ENST00000269137 LINC01006Q8NI28 216 aa10.8□□□□□ -0.68
SS18-201ENST00000269137 SMAD5-AS1Q9Y6J3 95 aa10.8□□□□□ -0.68
SS18-201ENST00000269137 A0A087X0K7 114 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms