RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TBC1D10CQ8IV04 446 aa23.92■■□□□ 1.42
CLN3-250ENST00000636839 STK11IPQ8N1F8 1099 aa23.92■■□□□ 1.42
CLN3-250ENST00000636839 TACC3Q9Y6A5 838 aa23.92■■□□□ 1.42
CLN3-250ENST00000636839 GNAT2P19087 354 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 RPS6KB1P23443 525 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 TDO2P48775 406 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 EVX2Q03828 476 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 CHST3Q7LGC8 479 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 SH3RF3Q8TEJ3 882 aaPredicted RBP23.91■■□□□ 1.42
CLN3-250ENST00000636839 LRRC2Q9BYS8 371 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 SCNN1DP51172 638 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 CTDSPL2Q05D32 466 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 KRT32Q14532 448 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 TMX3Q96JJ7 454 aa23.91■■□□□ 1.42
CLN3-250ENST00000636839 MROH7-TTC4A0A0A0MT08 1334 aa23.9■■□□□ 1.42
CLN3-250ENST00000636839 CYP2D7A0A087X1C5 515 aa23.9■■□□□ 1.42
CLN3-250ENST00000636839 DACT2Q5SW24 774 aa23.9■■□□□ 1.42
CLN3-250ENST00000636839 TTF2Q9UNY4 1162 aaKnown RBP23.9■■□□□ 1.42
CLN3-250ENST00000636839 BRCA1P38398 1863 aaKnown RBP23.9■■□□□ 1.42
CLN3-250ENST00000636839 MAST2Q6P0Q8 1798 aa23.9■■□□□ 1.42
CLN3-250ENST00000636839 GSTO1P78417 241 aa23.89■■□□□ 1.42
CLN3-250ENST00000636839 LARGE2Q8N3Y3 721 aa23.89■■□□□ 1.42
CLN3-250ENST00000636839 BTDP43251 543 aa23.89■■□□□ 1.41
CLN3-250ENST00000636839 NACAP1Q9BZK3 213 aa23.89■■□□□ 1.41
CLN3-250ENST00000636839 GRIPAP1Q4V328 841 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 KIAA0825Q8IV33 1275 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 MYH2Q9UKX2 1941 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 USP17L3A6NCW0 530 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 USP17L4A6NCW7 530 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 NFKBIEO00221 500 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 STRIP1Q5VSL9 837 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 USP17L1Q7RTZ2 530 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 DAGLAQ9Y4D2 1042 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 PCDHAC2Q9Y5I4 1007 aa23.88■■□□□ 1.41
CLN3-250ENST00000636839 MINDY4BA8MYZ0 360 aa23.87■■□□□ 1.41
CLN3-250ENST00000636839 LARGE1O95461 756 aa23.87■■□□□ 1.41
CLN3-250ENST00000636839 LDHCP07864 332 aa23.87■■□□□ 1.41
CLN3-250ENST00000636839 TOB2Q14106 344 aaPredicted RBP23.87■■□□□ 1.41
CLN3-250ENST00000636839 SLC4A8Q2Y0W8 1093 aa23.87■■□□□ 1.41
CLN3-250ENST00000636839 FHDC1Q9C0D6 1143 aaPredicted RBP23.87■■□□□ 1.41
CLN3-250ENST00000636839 DCP1AQ9NPI6 582 aaPredicted RBP23.87■■□□□ 1.41
CLN3-250ENST00000636839 GPR75-ASB3A0A0A6YYF3 556 aa23.86■■□□□ 1.41
CLN3-250ENST00000636839 DTNBO60941 627 aa23.86■■□□□ 1.41
CLN3-250ENST00000636839 RAD17O75943 681 aa23.86■■□□□ 1.41
CLN3-250ENST00000636839 SOGA3Q5TF21 947 aa23.86■■□□□ 1.41
CLN3-250ENST00000636839 CRNKL1Q9BZJ0 848 aaKnown RBP23.86■■□□□ 1.41
CLN3-250ENST00000636839 ZMYM6O95789 1325 aa23.86■■□□□ 1.41
CLN3-250ENST00000636839 PPP4CP60510 307 aa23.86■■□□□ 1.41
CLN3-250ENST00000636839 GPHNQ9NQX3 736 aaPredicted RBP23.86■■□□□ 1.41
CLN3-250ENST00000636839 GAKO14976 1311 aa23.85■■□□□ 1.41
CLN3-250ENST00000636839 NEDD4P46934 1319 aa23.85■■□□□ 1.41
CLN3-250ENST00000636839 CYP2D6P10635 497 aa23.85■■□□□ 1.41
CLN3-250ENST00000636839 EXOSC10Q01780 885 aaKnown RBP23.85■■□□□ 1.41
CLN3-250ENST00000636839 CTR9Q6PD62 1173 aa23.85■■□□□ 1.41
CLN3-250ENST00000636839 DHX32Q7L7V1 743 aaKnown RBP23.85■■□□□ 1.41
CLN3-250ENST00000636839 FAM163AQ96GL9 167 aaPredicted RBP23.85■■□□□ 1.41
CLN3-250ENST00000636839 TPCN1Q9ULQ1 816 aa23.85■■□□□ 1.41
CLN3-250ENST00000636839 LAMA4Q16363 1823 aa23.85■■□□□ 1.41
CLN3-250ENST00000636839 USP17L12C9JPN9 530 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 USP17L21D6R901 530 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 BAG3O95817 575 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 HSP90AA1P07900 732 aaKnown RBP23.84■■□□□ 1.41
CLN3-250ENST00000636839 IARSP41252 1262 aaKnown RBP23.84■■□□□ 1.41
CLN3-250ENST00000636839 TMED8Q6PL24 325 aaPredicted RBP23.84■■□□□ 1.41
CLN3-250ENST00000636839 Q6ZUG5 572 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 TGFBRAP1Q8WUH2 860 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 TAOK3Q9H2K8 898 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 BAZ2AQ9UIF9 1905 aaKnown RBP23.84■■□□□ 1.41
CLN3-250ENST00000636839 MCM2P49736 904 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 PRELPP51888 382 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 RHBDL3P58872 404 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 RASSF7Q02833 373 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 PPARAQ07869 468 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 LIMCH1Q9UPQ0 1083 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 SUGT1Q9Y2Z0 365 aa23.84■■□□□ 1.41
CLN3-250ENST00000636839 USP17L8P0C7I0 530 aa23.83■■□□□ 1.41
CLN3-250ENST00000636839 MB21D2Q8IYB1 491 aaPredicted RBP23.83■■□□□ 1.41
CLN3-250ENST00000636839 MKRN1Q9UHC7 482 aaKnown RBP23.83■■□□□ 1.41
CLN3-250ENST00000636839 ADAMTSL1Q8N6G6 1762 aa23.83■■□□□ 1.4
CLN3-250ENST00000636839 B4E1Z4 1266 aa23.83■■□□□ 1.4
CLN3-250ENST00000636839 IGSF3O75054 1194 aa23.83■■□□□ 1.4
CLN3-250ENST00000636839 ANTXR2P58335 489 aa23.83■■□□□ 1.4
CLN3-250ENST00000636839 MAPKAPK5Q8IW41 473 aa23.83■■□□□ 1.4
CLN3-250ENST00000636839 NOL10Q9BSC4 688 aaKnown RBP23.83■■□□□ 1.4
CLN3-250ENST00000636839 ZNF646O15015 1829 aaPredicted RBP23.82■■□□□ 1.4
CLN3-250ENST00000636839 PSMD14O00487 310 aa23.82■■□□□ 1.4
CLN3-250ENST00000636839 USP5P45974 858 aa23.82■■□□□ 1.4
CLN3-250ENST00000636839 ME3Q16798 604 aa23.82■■□□□ 1.4
CLN3-250ENST00000636839 CYB5R4Q7L1T6 521 aa23.82■■□□□ 1.4
CLN3-250ENST00000636839 NCOA7Q8NI08 942 aa23.82■■□□□ 1.4
CLN3-250ENST00000636839 ATP8A2Q9NTI2 1148 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 ZBTB12Q9Y330 459 aaPredicted RBP23.81■■□□□ 1.4
CLN3-250ENST00000636839 HMGB1P09429 215 aaKnown RBP23.81■■□□□ 1.4
CLN3-250ENST00000636839 AKNAD1Q5T1N1 836 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 SLF2Q8IX21 1173 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 TEX11Q8IYF3 940 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 NECAB1Q8N987 351 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 BRF1Q92994 677 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 MCM9Q9NXL9 1143 aa23.81■■□□□ 1.4
CLN3-250ENST00000636839 SAP30BPQ9UHR5 308 aaKnown RBP23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms