RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SCAF8Q9UPN6 1271 aaKnown RBP31.33■■■□□ 2.61
TRIM28-204ENST00000594806 SUPT20HL1Q3ZLR7 823 aa31.32■■■□□ 2.6
TRIM28-204ENST00000594806 DLK2Q6UY11 383 aa31.32■■■□□ 2.6
TRIM28-204ENST00000594806 DNAJC2Q99543 621 aaKnown RBP31.32■■■□□ 2.6
TRIM28-204ENST00000594806 USP40Q9NVE5 1235 aa31.32■■■□□ 2.6
TRIM28-204ENST00000594806 TLL2Q9Y6L7 1015 aa31.32■■■□□ 2.6
TRIM28-204ENST00000594806 ERC2O15083 957 aa31.31■■■□□ 2.6
TRIM28-204ENST00000594806 IDH1O75874 414 aaKnown RBP31.31■■■□□ 2.6
TRIM28-204ENST00000594806 HHIPL1Q96JK4 782 aa31.31■■■□□ 2.6
TRIM28-204ENST00000594806 NOL10Q9BSC4 688 aaKnown RBP31.31■■■□□ 2.6
TRIM28-204ENST00000594806 ANTXR1Q9H6X2 564 aa31.31■■■□□ 2.6
TRIM28-204ENST00000594806 PAG1Q9NWQ8 432 aa31.31■■■□□ 2.6
TRIM28-204ENST00000594806 ABT1Q9ULW3 272 aaKnown RBP31.31■■■□□ 2.6
TRIM28-204ENST00000594806 NDUFB9Q9Y6M9 179 aa31.31■■■□□ 2.6
TRIM28-204ENST00000594806 TCP10L2B9ZVM9 353 aa31.3■■■□□ 2.6
TRIM28-204ENST00000594806 BAG3O95817 575 aa31.3■■■□□ 2.6
TRIM28-204ENST00000594806 BTDP43251 543 aa31.3■■■□□ 2.6
TRIM28-204ENST00000594806 RASSF10A6NK89 507 aa31.29■■■□□ 2.6
TRIM28-204ENST00000594806 GOLIM4O00461 696 aa31.29■■■□□ 2.6
TRIM28-204ENST00000594806 SAPCD2Q86UD0 394 aa31.29■■■□□ 2.6
TRIM28-204ENST00000594806 CERS3Q8IU89 383 aa31.29■■■□□ 2.6
TRIM28-204ENST00000594806 PLCG2P16885 1265 aa31.28■■■□□ 2.6
TRIM28-204ENST00000594806 MX1P20591 662 aa31.28■■■□□ 2.6
TRIM28-204ENST00000594806 HTRA3P83110 453 aa31.28■■■□□ 2.6
TRIM28-204ENST00000594806 IDI2Q9BXS1 227 aa31.28■■■□□ 2.6
TRIM28-204ENST00000594806 PAPPA2Q9BXP8 1791 aa31.28■■■□□ 2.6
TRIM28-204ENST00000594806 GLRX3O76003 335 aaKnown RBP31.27■■■□□ 2.6
TRIM28-204ENST00000594806 PPP4CP60510 307 aa31.27■■■□□ 2.6
TRIM28-204ENST00000594806 NUCB1Q02818 461 aa31.27■■■□□ 2.6
TRIM28-204ENST00000594806 PRAMEF18Q5VWM3 479 aa31.27■■■□□ 2.6
TRIM28-204ENST00000594806 RPAP1Q9BWH6 1393 aaPredicted RBP31.27■■■□□ 2.6
TRIM28-204ENST00000594806 SALL3Q9BXA9 1300 aa31.26■■■□□ 2.6
TRIM28-204ENST00000594806 NPM3O75607 178 aaKnown RBP31.26■■■□□ 2.59
TRIM28-204ENST00000594806 CACNB3P54284 484 aa31.26■■■□□ 2.59
TRIM28-204ENST00000594806 DEFB115Q30KQ5 88 aa31.26■■■□□ 2.59
TRIM28-204ENST00000594806 CHD1LQ86WJ1 897 aa31.26■■■□□ 2.59
TRIM28-204ENST00000594806 DNAJC5GQ8N7S2 189 aa31.26■■■□□ 2.59
TRIM28-204ENST00000594806 FAM151AQ8WW52 585 aa31.26■■■□□ 2.59
TRIM28-204ENST00000594806 HOOK2Q96ED9 719 aa31.26■■■□□ 2.59
TRIM28-204ENST00000594806 DDX24Q9GZR7 859 aaKnown RBP eCLIP31.26■■■□□ 2.591e-8■■□□□ 13.7
TRIM28-204ENST00000594806 ENTPD3O75355 529 aa31.25■■■□□ 2.59
TRIM28-204ENST00000594806 CYP7A1P22680 504 aa31.25■■■□□ 2.59
TRIM28-204ENST00000594806 MAGEB6Q8N7X4 407 aa31.25■■■□□ 2.59
TRIM28-204ENST00000594806 STAP2Q9UGK3 403 aa31.25■■■□□ 2.59
TRIM28-204ENST00000594806 CNTNAP1P78357 1384 aa31.25■■■□□ 2.59
TRIM28-204ENST00000594806 RHBDL3P58872 404 aa31.24■■■□□ 2.59
TRIM28-204ENST00000594806 B4GALNT3Q6L9W6 998 aa31.24■■■□□ 2.59
TRIM28-204ENST00000594806 KLRG1Q96E93 195 aa31.24■■■□□ 2.59
TRIM28-204ENST00000594806 TEPSINQ96N21 525 aa31.24■■■□□ 2.59
TRIM28-204ENST00000594806 PPP1R12BO60237 982 aaPredicted RBP31.23■■■□□ 2.59
TRIM28-204ENST00000594806 HUNKP57058 714 aa31.23■■■□□ 2.59
TRIM28-204ENST00000594806 SLC9C2Q5TAH2 1124 aa31.23■■■□□ 2.59
TRIM28-204ENST00000594806 ARMC9Q7Z3E5 817 aa31.23■■■□□ 2.59
TRIM28-204ENST00000594806 LNPKQ9C0E8 428 aa31.23■■■□□ 2.59
TRIM28-204ENST00000594806 TMEM39BQ9GZU3 492 aa31.23■■■□□ 2.59
TRIM28-204ENST00000594806 NEFLP07196 543 aa31.22■■■□□ 2.59
TRIM28-204ENST00000594806 NBPF12Q5TAG4 269 aaPredicted RBP31.22■■■□□ 2.59
TRIM28-204ENST00000594806 ZSCAN25Q6NSZ9 544 aa31.22■■■□□ 2.59
TRIM28-204ENST00000594806 PI4K2BQ8TCG2 481 aa31.22■■■□□ 2.59
TRIM28-204ENST00000594806 OTUD7AQ8TE49 926 aaPredicted RBP31.22■■■□□ 2.59
TRIM28-204ENST00000594806 MYH7P12883 1935 aa31.22■■■□□ 2.59
TRIM28-204ENST00000594806 RFX7Q2KHR2 1363 aa31.21■■■□□ 2.59
TRIM28-204ENST00000594806 UNCXA6NJT0 531 aa31.21■■■□□ 2.59
TRIM28-204ENST00000594806 WDHD1O75717 1129 aaPredicted RBP31.21■■■□□ 2.59
TRIM28-204ENST00000594806 ECE1P42892 770 aa31.21■■■□□ 2.59
TRIM28-204ENST00000594806 NFIAQ12857 509 aa31.21■■■□□ 2.59
TRIM28-204ENST00000594806 TTLL12Q14166 644 aaPredicted RBP31.21■■■□□ 2.59
TRIM28-204ENST00000594806 EDC3Q96F86 508 aaKnown RBP31.21■■■□□ 2.59
TRIM28-204ENST00000594806 AATFQ9NY61 560 aaKnown RBP eCLIP31.21■■■□□ 2.595e-7■■□□□ 12.6
TRIM28-204ENST00000594806 FAM198AQ9UFP1 575 aa31.21■■■□□ 2.59
TRIM28-204ENST00000594806 AK9Q5TCS8 1911 aa31.2■■■□□ 2.59
TRIM28-204ENST00000594806 PDE6AP16499 860 aa31.2■■■□□ 2.59
TRIM28-204ENST00000594806 RGS3P49796 1198 aa31.2■■■□□ 2.59
TRIM28-204ENST00000594806 PDE1AP54750 535 aa31.2■■■□□ 2.59
TRIM28-204ENST00000594806 MAP3K11Q16584 847 aa31.2■■■□□ 2.59
TRIM28-204ENST00000594806 ADGRA1Q86SQ6 560 aa31.2■■■□□ 2.59
TRIM28-204ENST00000594806 MKRN1Q9UHC7 482 aaKnown RBP31.2■■■□□ 2.59
TRIM28-204ENST00000594806 TSHZ3Q63HK5 1081 aa31.19■■■□□ 2.58
TRIM28-204ENST00000594806 TCP10Q12799 353 aa31.18■■■□□ 2.58
TRIM28-204ENST00000594806 UBE3CQ15386 1083 aa31.18■■■□□ 2.58
TRIM28-204ENST00000594806 LRRFIP1Q32MZ4 808 aaKnown RBP31.18■■■□□ 2.58
TRIM28-204ENST00000594806 TEX11Q8IYF3 940 aa31.18■■■□□ 2.58
TRIM28-204ENST00000594806 KBTBD3Q8NAB2 608 aa31.18■■■□□ 2.58
TRIM28-204ENST00000594806 ADD2P35612 726 aa31.17■■■□□ 2.58
TRIM28-204ENST00000594806 ZNF532Q9HCE3 1301 aa31.17■■■□□ 2.58
TRIM28-204ENST00000594806 SSC5DA1L4H1 1573 aa31.17■■■□□ 2.58
TRIM28-204ENST00000594806 IREB2P48200 963 aaKnown RBP31.16■■■□□ 2.58
TRIM28-204ENST00000594806 DCAF15Q66K64 600 aa31.16■■■□□ 2.58
TRIM28-204ENST00000594806 RGMBQ6NW40 437 aa31.16■■■□□ 2.58
TRIM28-204ENST00000594806 SH3RF3Q8TEJ3 882 aaPredicted RBP31.16■■■□□ 2.58
TRIM28-204ENST00000594806 ANGEL1Q9UNK9 670 aaKnown RBP31.16■■■□□ 2.58
TRIM28-204ENST00000594806 TCRBV5S4A2TA0A5A2 114 aa31.15■■■□□ 2.58
TRIM28-204ENST00000594806 CCDC102AQ96A19 550 aa31.15■■■□□ 2.58
TRIM28-204ENST00000594806 OSBPL3Q9H4L5 887 aa31.15■■■□□ 2.58
TRIM28-204ENST00000594806 COL2A1P02458 1487 aaPredicted RBP31.14■■■□□ 2.58
TRIM28-204ENST00000594806 ZFYP08048 801 aaPredicted RBP31.14■■■□□ 2.58
TRIM28-204ENST00000594806 VEGFBP49765 207 aa31.14■■■□□ 2.58
TRIM28-204ENST00000594806 LDLRAD1Q5T700 205 aa31.14■■■□□ 2.58
TRIM28-204ENST00000594806 PAXIP1Q6ZW49 1069 aaPredicted RBP31.14■■■□□ 2.58
TRIM28-204ENST00000594806 CAPNS2Q96L46 248 aa31.14■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms