RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SNRKQ9NRH2 765 aa15.84■□□□□ 0.13
CLK3-224ENST00000568605 SCAF8Q9UPN6 1271 aaKnown RBP15.84■□□□□ 0.13
CLK3-224ENST00000568605 SSC5DA1L4H1 1573 aa15.83■□□□□ 0.13
CLK3-224ENST00000568605 TCP10L2B9ZVM9 353 aa15.83■□□□□ 0.12
CLK3-224ENST00000568605 HDAC1Q13547 482 aaPredicted RBP15.83■□□□□ 0.12
CLK3-224ENST00000568605 RASA3Q14644 834 aa15.83■□□□□ 0.12
CLK3-224ENST00000568605 APOBEC3HQ6NTF7 200 aaKnown RBP15.83■□□□□ 0.12
CLK3-224ENST00000568605 TMED8Q6PL24 325 aaPredicted RBP15.83■□□□□ 0.12
CLK3-224ENST00000568605 ARMC9Q7Z3E5 817 aa15.83■□□□□ 0.12
CLK3-224ENST00000568605 FAM83AQ86UY5 434 aa15.83■□□□□ 0.12
CLK3-224ENST00000568605 GCC1Q96CN9 775 aa15.83■□□□□ 0.12
CLK3-224ENST00000568605 AOX1Q06278 1338 aa15.83■□□□□ 0.12
CLK3-224ENST00000568605 PPP1R12BO60237 982 aaPredicted RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 MAP4K4O95819 1239 aaPredicted RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 CYP2E1P05181 493 aaPredicted RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 ZAP70P43403 619 aa15.82■□□□□ 0.12
CLK3-224ENST00000568605 NAA16Q6N069 864 aaPredicted RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 DLK2Q6UY11 383 aa15.82■□□□□ 0.12
CLK3-224ENST00000568605 TBC1D9Q6ZT07 1266 aa15.82■□□□□ 0.12
CLK3-224ENST00000568605 NSUN4Q96CB9 384 aaKnown RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 FAM163AQ96GL9 167 aaPredicted RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 DDX60LQ5H9U9 1706 aaKnown RBP15.82■□□□□ 0.12
CLK3-224ENST00000568605 SIPA1L1O43166 1804 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 IDH1O75874 414 aaKnown RBP15.81■□□□□ 0.12
CLK3-224ENST00000568605 BTDP43251 543 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 MAP3K12Q12852 859 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 CDC42EP5Q6NZY7 148 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 JMYQ8N9B5 988 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 EXOC6Q8TAG9 804 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 CAPNS2Q96L46 248 aa15.81■□□□□ 0.12
CLK3-224ENST00000568605 WDR33Q9C0J8 1336 aaKnown RBP15.81■□□□□ 0.12
CLK3-224ENST00000568605 RWDD1Q9H446 243 aaPredicted RBP15.81■□□□□ 0.12
CLK3-224ENST00000568605 BAZ2AQ9UIF9 1905 aaKnown RBP15.81■□□□□ 0.12
CLK3-224ENST00000568605 RFX7Q2KHR2 1363 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 SMARCA5O60264 1052 aaPredicted RBP15.8■□□□□ 0.12
CLK3-224ENST00000568605 BAG3O95817 575 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 PLCG2P16885 1265 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 ATP5JP18859 108 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 VEGFBP49765 207 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 CACNB3P54284 484 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 GRM1Q13255 1194 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 PRAMEF18Q5VWM3 479 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 RGMBQ6NW40 437 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 CERS3Q8IU89 383 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 DNAJC2Q99543 621 aaKnown RBP15.8■□□□□ 0.12
CLK3-224ENST00000568605 USP40Q9NVE5 1235 aa15.8■□□□□ 0.12
CLK3-224ENST00000568605 COL2A1P02458 1487 aaPredicted RBP15.79■□□□□ 0.12
CLK3-224ENST00000568605 PTPRFP10586 1907 aa15.79■□□□□ 0.12
CLK3-224ENST00000568605 GPR75-ASB3A0A0A6YYF3 556 aa15.79■□□□□ 0.12
CLK3-224ENST00000568605 IREB2P48200 963 aaKnown RBP15.79■□□□□ 0.12
CLK3-224ENST00000568605 CYP4F22Q6NT55 531 aa15.79■□□□□ 0.12
CLK3-224ENST00000568605 CCDC102AQ96A19 550 aa15.79■□□□□ 0.12
CLK3-224ENST00000568605 ECHDC1Q9NTX5 307 aa15.79■□□□□ 0.12
CLK3-224ENST00000568605 ANGEL1Q9UNK9 670 aaKnown RBP15.79■□□□□ 0.12
CLK3-224ENST00000568605 TTC41PQ6P2S7 1318 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 ZNF157P51786 506 aaPredicted RBP15.78■□□□□ 0.12
CLK3-224ENST00000568605 NOGQ13253 232 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 NBPF12Q5TAG4 269 aaPredicted RBP15.78■□□□□ 0.12
CLK3-224ENST00000568605 DCAF15Q66K64 600 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 FAM151AQ8WW52 585 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 IDI2Q9BXS1 227 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.78■□□□□ 0.123e-7■■□□□ 14.4
CLK3-224ENST00000568605 TMEM39BQ9GZU3 492 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 PIH1D3Q9NQM4 214 aaKnown RBP15.78■□□□□ 0.12
CLK3-224ENST00000568605 PAG1Q9NWQ8 432 aa15.78■□□□□ 0.12
CLK3-224ENST00000568605 UNCXA6NJT0 531 aa15.77■□□□□ 0.12
CLK3-224ENST00000568605 GOLIM4O00461 696 aa15.77■□□□□ 0.12
CLK3-224ENST00000568605 ERC2O15083 957 aa15.77■□□□□ 0.12
CLK3-224ENST00000568605 ENTPD3O75355 529 aa15.77■□□□□ 0.12
CLK3-224ENST00000568605 PRKG1Q13976 671 aa15.77■□□□□ 0.12
CLK3-224ENST00000568605 TEPSINQ96N21 525 aa15.77■□□□□ 0.12
CLK3-224ENST00000568605 PHIPQ8WWQ0 1821 aa15.77■□□□□ 0.11
CLK3-224ENST00000568605 MAP2K2P36507 400 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 RGS3P49796 1198 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 TCP10Q12799 353 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 MAP3K11Q16584 847 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 MAGEB6Q8N7X4 407 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 ZNF384Q8TF68 577 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 HAUS7Q99871 368 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 BOLA2Q9H3K6 86 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 AATFQ9NY61 560 aaKnown RBP eCLIP15.76■□□□□ 0.11
CLK3-224ENST00000568605 NDUFB9Q9Y6M9 179 aa15.76■□□□□ 0.11
CLK3-224ENST00000568605 UBE2Q2LH0YL09 131 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 NPM3O75607 178 aaKnown RBP15.75■□□□□ 0.11
CLK3-224ENST00000568605 SLC10A3P09131 477 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 MX1P20591 662 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 CYP7A1P22680 504 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 MAP2K1Q02750 393 aaPredicted RBP15.75■□□□□ 0.11
CLK3-224ENST00000568605 NFIAQ12857 509 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 PICALMQ13492 652 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 ANKRD45Q5TZF3 282 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 ZSCAN29Q8IWY8 852 aaPredicted RBP15.75■□□□□ 0.11
CLK3-224ENST00000568605 TEX11Q8IYF3 940 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 ANKRD13AQ8IZ07 590 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 AIDAQ96BJ3 306 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 BEGAINQ9BUH8 593 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 ANTXR1Q9H6X2 564 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 ATRNL1Q5VV63 1379 aa15.75■□□□□ 0.11
CLK3-224ENST00000568605 WDHD1O75717 1129 aaPredicted RBP15.74■□□□□ 0.11
CLK3-224ENST00000568605 RHBDL3P58872 404 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms