RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 DSCC1Q9BVC3 393 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 AGXT2Q9BYV1 514 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 DDR1Q08345 913 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 STOX1Q6ZVD7 989 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 LRRC2Q9BYS8 371 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 CHGBP05060 677 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 EXOSC10Q01780 885 aaKnown RBP15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CEBPZQ03701 1054 aaKnown RBP15.42■□□□□ 0.06
VPS4A-204ENST00000566354 SLC15A2Q16348 729 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CCDC73Q6ZRK6 1079 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CNBD1Q8NA66 436 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 PTPDC1A2A3K4 754 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CTDNEP1O95476 244 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CBX1P83916 185 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 ATP2B3Q16720 1220 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CCDC144BQ3MJ40 725 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 CCDC144CPQ8IYA2 1237 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 RIPOR2Q9Y4F9 1068 aa15.42■□□□□ 0.06
VPS4A-204ENST00000566354 SPEF2Q9C093 1822 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 TNRC6CQ9HCJ0 1690 aaKnown RBP15.41■□□□□ 0.06
VPS4A-204ENST00000566354 KINO60870 393 aaKnown RBP15.41■□□□□ 0.06
VPS4A-204ENST00000566354 SERPINB2P05120 415 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 ZSCAN20P17040 1043 aaPredicted RBP15.41■□□□□ 0.06
VPS4A-204ENST00000566354 FAM160A1Q05DH4 1040 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 SNW1Q13573 536 aaKnown RBP15.41■□□□□ 0.06
VPS4A-204ENST00000566354 SF3B3Q15393 1217 aaKnown RBP15.41■□□□□ 0.06
VPS4A-204ENST00000566354 TPD52L1Q16890 204 aaPredicted RBP15.41■□□□□ 0.06
VPS4A-204ENST00000566354 PRR5LQ6MZQ0 368 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 LRRC8AQ8IWT6 810 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 FLAD1Q8NFF5 587 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 CNNM1Q9NRU3 951 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 MYH15Q9Y2K3 1946 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 RIC1Q4ADV7 1423 aa15.41■□□□□ 0.06
VPS4A-204ENST00000566354 BECN2A8MW95 431 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 TIMM10P62072 90 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 DMTNQ08495 405 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 C11orf57Q6ZUT1 292 aaPredicted RBP15.4■□□□□ 0.06
VPS4A-204ENST00000566354 ZNF274Q96GC6 653 aaPredicted RBP15.4■□□□□ 0.06
VPS4A-204ENST00000566354 NLRP3Q96P20 1036 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 ANO10Q9NW15 660 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 PAG1Q9NWQ8 432 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 STK32BQ9NY57 414 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 RTL9Q8NET4 1388 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 POLRMTO00411 1230 aaKnown RBP15.4■□□□□ 0.06
VPS4A-204ENST00000566354 KIF20AO95235 890 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 APOBRQ0VD83 1088 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 MSL1Q68DK7 614 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 ENGASEQ8NFI3 743 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 USP28Q96RU2 1077 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 FEZ1Q99689 392 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 GPR108Q9NPR9 543 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 PRDM10Q9NQV6 1147 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 CEP126Q9P2H0 1117 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 LRP5O75197 1615 aa15.4■□□□□ 0.06
VPS4A-204ENST00000566354 NCBP1Q09161 790 aaKnown RBP15.39■□□□□ 0.05
VPS4A-204ENST00000566354 CCDC112Q8NEF3 446 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 GOLPH3LQ9H4A5 285 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 SALL1Q9NSC2 1324 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 LAMA4Q16363 1823 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 GOLIM4O00461 696 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 METTL24Q5JXM2 366 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 ZMYM1Q5SVZ6 1142 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 NLGN1Q8N2Q7 840 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 NEUROD6Q96NK8 337 aa15.39■□□□□ 0.05
VPS4A-204ENST00000566354 MPHOSPH8Q99549 860 aa15.38■□□□□ 0.05
VPS4A-204ENST00000566354 GTPBP4Q9BZE4 634 aaKnown RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 PDGFDQ9GZP0 370 aaPredicted RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 NAT10Q9H0A0 1025 aaKnown RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 A0A1B0GUL7 405 aa15.38■□□□□ 0.05
VPS4A-204ENST00000566354 E7EWF7 191 aa15.38■□□□□ 0.05
VPS4A-204ENST00000566354 HSPD1P10809 573 aaKnown RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 PDIA3P30101 505 aaKnown RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 ME1P48163 572 aa15.38■□□□□ 0.05
VPS4A-204ENST00000566354 CCT2P78371 535 aaKnown RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 DHX40Q8IX18 779 aaKnown RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 CEP57L1Q8IYX8 460 aa15.38■□□□□ 0.05
VPS4A-204ENST00000566354 FBXL16Q8N461 479 aa15.38■□□□□ 0.05
VPS4A-204ENST00000566354 HELBQ8NG08 1087 aaPredicted RBP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 FTOQ9C0B1 505 aaKnown RBP eCLIP15.38■□□□□ 0.05
VPS4A-204ENST00000566354 IGHMBP2P38935 993 aaKnown RBP15.37■□□□□ 0.05
VPS4A-204ENST00000566354 CEP135Q66GS9 1140 aa15.37■□□□□ 0.05
VPS4A-204ENST00000566354 VGLL2Q8N8G2 317 aa15.37■□□□□ 0.05
VPS4A-204ENST00000566354 FSIP1Q8NA03 581 aa15.37■□□□□ 0.05
VPS4A-204ENST00000566354 CELF1Q92879 486 aaKnown RBP15.37■□□□□ 0.05
VPS4A-204ENST00000566354 TMEM51Q9NW97 253 aa15.37■□□□□ 0.05
VPS4A-204ENST00000566354 SKILP12757 684 aa15.37■□□□□ 0.05
VPS4A-204ENST00000566354 CDC5LQ99459 802 aaKnown RBP15.37■□□□□ 0.05
VPS4A-204ENST00000566354 MMP10P09238 476 aa15.36■□□□□ 0.05
VPS4A-204ENST00000566354 U2AF2P26368 475 aaKnown RBP eCLIP15.36■□□□□ 0.05
VPS4A-204ENST00000566354 FOSBP53539 338 aa15.36■□□□□ 0.05
VPS4A-204ENST00000566354 EVCP57679 992 aa15.36■□□□□ 0.05
VPS4A-204ENST00000566354 ADALQ6DHV7 355 aa15.36■□□□□ 0.05
VPS4A-204ENST00000566354 NCOA5Q9HCD5 579 aaKnown RBP15.36■□□□□ 0.05
VPS4A-204ENST00000566354 RTEL1Q9NZ71 1219 aa15.36■□□□□ 0.05
VPS4A-204ENST00000566354 A0A1W2PQ27 194 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 A0A1W2PQ64 194 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 A0A1W2PQD8 194 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 SNAP23O00161 211 aa15.35■□□□□ 0.05
VPS4A-204ENST00000566354 RNF113AO15541 343 aaKnown RBP15.35■□□□□ 0.05
VPS4A-204ENST00000566354 ADORA1P30542 326 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms