RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DDX4Q9NQI0 724 aaKnown RBP11.3□□□□□ -0.6
VPS35-206ENST00000565228 FAM198AQ9UFP1 575 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 HDAC9Q9UKV0 1011 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 U3KPZ7 1027 aaPredicted RBP11.3□□□□□ -0.6
VPS35-206ENST00000565228 OTOFQ9HC10 1997 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 SIPA1L1O43166 1804 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 TMEM88BA6NKF7 163 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 TCP10L2B9ZVM9 353 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 PDE4AP27815 886 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 RASA3Q14644 834 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 NBPF12Q5TAG4 269 aaPredicted RBP11.29□□□□□ -0.6
VPS35-206ENST00000565228 TEKT1Q969V4 418 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 FAM163AQ96GL9 167 aaPredicted RBP11.29□□□□□ -0.6
VPS35-206ENST00000565228 ZIC5Q96T25 663 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 TMEM39BQ9GZU3 492 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 DEFB129Q9H1M3 183 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 VEZTQ9HBM0 779 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 CREBZFQ9NS37 354 aa11.29□□□□□ -0.6
VPS35-206ENST00000565228 FOCADQ5VW36 1801 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 GPR75-ASB3A0A0A6YYF3 556 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 TCRBV5S4A2TA0A5A2 114 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 WDHD1O75717 1129 aaPredicted RBP11.28□□□□□ -0.6
VPS35-206ENST00000565228 IFIT2P09913 472 aaKnown RBP11.28□□□□□ -0.6
VPS35-206ENST00000565228 ATP5JP18859 108 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 MMP14P50281 582 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 DYNLL1P63167 89 aaKnown RBP11.28□□□□□ -0.6
VPS35-206ENST00000565228 EVX2Q03828 476 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 B4GALNT3Q6L9W6 998 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 ERICH6Q7L0X2 663 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 SAPCD2Q86UD0 394 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.28□□□□□ -0.6
VPS35-206ENST00000565228 HAUS7Q99871 368 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 MKRN1Q9UHC7 482 aaKnown RBP11.28□□□□□ -0.6
VPS35-206ENST00000565228 TLL2Q9Y6L7 1015 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 MYH7P12883 1935 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 MROH7-TTC4A0A0A0MT08 1334 aa11.28□□□□□ -0.6
VPS35-206ENST00000565228 GOLIM4O00461 696 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 MAP4K4O95819 1239 aaPredicted RBP11.27□□□□□ -0.61
VPS35-206ENST00000565228 BTDP43251 543 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 ANKRD45Q5TZF3 282 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 SULF1Q8IWU6 871 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 USP40Q9NVE5 1235 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 RAI14Q9P0K7 980 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 ATRNL1Q5VV63 1379 aa11.27□□□□□ -0.61
VPS35-206ENST00000565228 TNRC18O15417 2968 aaPredicted RBP11.26□□□□□ -0.61
VPS35-206ENST00000565228 RASSF10A6NK89 507 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 VEGFBP49765 207 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 NUCB1Q02818 461 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 PRKG1Q13976 671 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 CYP4F22Q6NT55 531 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 APOBEC3FQ8IUX4 373 aaKnown RBP11.26□□□□□ -0.61
VPS35-206ENST00000565228 SH3RF3Q8TEJ3 882 aaPredicted RBP11.26□□□□□ -0.61
VPS35-206ENST00000565228 DNAJC2Q99543 621 aaKnown RBP11.26□□□□□ -0.61
VPS35-206ENST00000565228 LNPKQ9C0E8 428 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 GBA2Q9HCG7 927 aaPredicted RBP11.26□□□□□ -0.61
VPS35-206ENST00000565228 LRP2BPQ9P2M1 347 aa11.26□□□□□ -0.61
VPS35-206ENST00000565228 THSD7BQ9C0I4 1608 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 DDTLA6NHG4 134 aaPredicted RBP11.25□□□□□ -0.61
VPS35-206ENST00000565228 FAM155AB1AL88 458 aaPredicted RBP11.25□□□□□ -0.61
VPS35-206ENST00000565228 UBE2Q2LH0YL09 131 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 SMIM22K7EJ46 135 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 USP2O75604 605 aaPredicted RBP11.25□□□□□ -0.61
VPS35-206ENST00000565228 TCP10Q12799 353 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 AAMPQ13685 434 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 DZIP1Q86YF9 867 aaKnown RBP11.25□□□□□ -0.61
VPS35-206ENST00000565228 MAGEB6Q8N7X4 407 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 GCC1Q96CN9 775 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 RIOK1Q9BRS2 568 aaKnown RBP11.25□□□□□ -0.61
VPS35-206ENST00000565228 ECHDC1Q9NTX5 307 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 AATFQ9NY61 560 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS35-206ENST00000565228 DDX60LQ5H9U9 1706 aaKnown RBP11.25□□□□□ -0.61
VPS35-206ENST00000565228 MAST3O60307 1309 aa11.25□□□□□ -0.61
VPS35-206ENST00000565228 AOC2O75106 756 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 IDH1O75874 414 aaKnown RBP11.24□□□□□ -0.61
VPS35-206ENST00000565228 PDE6AP16499 860 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 CYP7A1P22680 504 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 RGS3P49796 1198 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 PPP4CP60510 307 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 SPTY2D1Q68D10 685 aaPredicted RBP11.24□□□□□ -0.61
VPS35-206ENST00000565228 NAA16Q6N069 864 aaPredicted RBP11.24□□□□□ -0.61
VPS35-206ENST00000565228 PLEKHM2Q8IWE5 1019 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 ZGPATQ8N5A5 531 aaKnown RBP11.24□□□□□ -0.61
VPS35-206ENST00000565228 MIGA1Q8NAN2 632 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 CLMNQ96JQ2 1002 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 IDI2Q9BXS1 227 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 RWDD1Q9H446 243 aaPredicted RBP11.24□□□□□ -0.61
VPS35-206ENST00000565228 PAG1Q9NWQ8 432 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 STAP2Q9UGK3 403 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 AK9Q5TCS8 1911 aa11.24□□□□□ -0.61
VPS35-206ENST00000565228 ADD2P35612 726 aa11.23□□□□□ -0.61
VPS35-206ENST00000565228 GJA5P36382 358 aa11.23□□□□□ -0.61
VPS35-206ENST00000565228 PDE1AP54750 535 aa11.23□□□□□ -0.61
VPS35-206ENST00000565228 RRP1BQ14684 758 aaKnown RBP11.23□□□□□ -0.61
VPS35-206ENST00000565228 LDLRAD1Q5T700 205 aa11.23□□□□□ -0.61
VPS35-206ENST00000565228 CHD1LQ86WJ1 897 aa11.23□□□□□ -0.61
VPS35-206ENST00000565228 ABT1Q9ULW3 272 aaKnown RBP11.23□□□□□ -0.61
VPS35-206ENST00000565228 ZNF532Q9HCE3 1301 aa11.23□□□□□ -0.61
VPS35-206ENST00000565228 PRKAB2O43741 272 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 MYH1P12882 1939 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 MX1P20591 662 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms