RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 C8orf76Q96K31 380 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 MYH7P12883 1935 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 hCG_1642624A0A1W2PR95 340 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 SH2B2O14492 632 aaPredicted RBP12.98□□□□□ -0.33
CUX1-212ENST00000547394 TRIM37O94972 964 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 CAVIN4Q5BKX8 364 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 TPTE2Q6XPS3 522 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 ZNF830Q96NB3 372 aaPredicted RBP12.98□□□□□ -0.33
CUX1-212ENST00000547394 LLPHQ9BRT6 129 aaKnown RBP12.98□□□□□ -0.33
CUX1-212ENST00000547394 LRP5O75197 1615 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 HMGN5P82970 282 aaKnown RBP12.98□□□□□ -0.33
CUX1-212ENST00000547394 TRAPPC3LQ5T215 181 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 APOA5Q6Q788 366 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 PPP1R9BQ96SB3 815 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 SCAND2PQ9GZW5 306 aaPredicted RBP12.98□□□□□ -0.33
CUX1-212ENST00000547394 GOLPH3LQ9H4A5 285 aa12.98□□□□□ -0.33
CUX1-212ENST00000547394 AATFQ9NY61 560 aaKnown RBP eCLIP12.98□□□□□ -0.331e-6■■■■■ 27.8
CUX1-212ENST00000547394 CSPP1Q1MSJ5 1256 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 IGDCC4Q8TDY8 1250 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 NUP133Q8WUM0 1156 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 NUP62CLQ9H1M0 184 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 LY9Q9HBG7 655 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 ANKIB1Q9P2G1 1089 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 CLIC4Q9Y696 253 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 MAGEB6P1A0A0J9YX57 407 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 ME1P48163 572 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 MFSD6Q6ZSS7 791 aa12.97□□□□□ -0.33
CUX1-212ENST00000547394 BTAF1O14981 1849 aa12.96□□□□□ -0.33
CUX1-212ENST00000547394 AP5Z1O43299 807 aa12.96□□□□□ -0.33
CUX1-212ENST00000547394 GUCY1A2P33402 732 aa12.96□□□□□ -0.33
CUX1-212ENST00000547394 TNMDQ9H2S6 317 aa12.96□□□□□ -0.33
CUX1-212ENST00000547394 QTRT2Q9H974 415 aaKnown RBP12.96□□□□□ -0.33
CUX1-212ENST00000547394 GOLGA8AA7E2F4 631 aa12.96□□□□□ -0.34
CUX1-212ENST00000547394 RANBP6O60518 1105 aaKnown RBP12.96□□□□□ -0.34
CUX1-212ENST00000547394 TM4SF1P30408 202 aa12.96□□□□□ -0.34
CUX1-212ENST00000547394 GRIK5Q16478 980 aa12.96□□□□□ -0.34
CUX1-212ENST00000547394 AKNAD1Q5T1N1 836 aa12.96□□□□□ -0.34
CUX1-212ENST00000547394 COL5A3P25940 1745 aaPredicted RBP12.96□□□□□ -0.34
CUX1-212ENST00000547394 CYP2D6P10635 497 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 NAA16Q6N069 864 aaPredicted RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 LUZP1Q86V48 1076 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 SLC26A6Q9BXS9 759 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 GNL3LQ9NVN8 582 aaKnown RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 ATRNO75882 1429 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 ZBTB43O43298 467 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 NMT2O60551 498 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 MARCKSP29966 332 aaPredicted RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 MECOMQ03112 1051 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 PPARAQ07869 468 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 UBE4AQ14139 1066 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 CCAR1Q8IX12 1150 aaKnown RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 PIBF1Q8WXW3 757 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 ALG1Q9BT22 464 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 FAM217BQ9NTX9 383 aaPredicted RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 ZNF804BA4D1E1 1349 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 RTL9Q8NET4 1388 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 PTMAP06454 111 aaKnown RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 HIBADHP31937 336 aaKnown RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 EVCP57679 992 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 FUCA2Q9BTY2 467 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 ZSCAN16Q9H4T2 348 aaPredicted RBP12.95□□□□□ -0.34
CUX1-212ENST00000547394 SLC12A7Q9Y666 1083 aa12.95□□□□□ -0.34
CUX1-212ENST00000547394 BAZ2BQ9UIF8 2168 aaKnown RBP12.94□□□□□ -0.34
CUX1-212ENST00000547394 A0A1B0GVL5 298 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 MAP3K11Q16584 847 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 CNBD1Q8NA66 436 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 FBXO18Q8NFZ0 1043 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 RIOK1Q9BRS2 568 aaKnown RBP12.94□□□□□ -0.34
CUX1-212ENST00000547394 NACAP1Q9BZK3 213 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 NYXQ9GZU5 481 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 CCDC69A6NI79 296 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 DIXDC1Q155Q3 683 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 SLC10A5Q5PT55 438 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 RC3H1Q5TC82 1133 aaKnown RBP12.94□□□□□ -0.34
CUX1-212ENST00000547394 CERKQ8TCT0 537 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 KCNJ14Q9UNX9 436 aa12.94□□□□□ -0.34
CUX1-212ENST00000547394 ELP1O95163 1332 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 USP17L12C9JPN9 530 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 USP17L21D6R901 530 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 ADCY5O95622 1261 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 ATP2B1P20020 1258 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 TYRO3Q06418 890 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 ANO6Q4KMQ2 910 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 FAM47AQ5JRC9 791 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 OLFM4Q6UX06 510 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 PDLIM2Q96JY6 352 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 CFAP45Q9UL16 551 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 MTMR7Q9Y216 660 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 ZMYM6O95789 1325 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 SPATA31A6Q5VVP1 1343 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 RREB1Q92766 1687 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 TICAM2Q86XR7 235 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 FSIP1Q8NA03 581 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 SPC24Q8NBT2 197 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 DNAJC25Q9H1X3 360 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 KIF3AQ9Y496 699 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 MRVI1Q9Y6F6 885 aa12.93□□□□□ -0.34
CUX1-212ENST00000547394 DHX16O60231 1041 aaKnown RBP12.92□□□□□ -0.34
CUX1-212ENST00000547394 PRR5LQ6MZQ0 368 aa12.92□□□□□ -0.34
CUX1-212ENST00000547394 FBXO33Q7Z6M2 555 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms