RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 APOBEC3HQ6NTF7 200 aaKnown RBP17.57■□□□□ 0.4
BRCA1-223ENST00000494123 MIGA1Q8NAN2 632 aa17.57■□□□□ 0.4
BRCA1-223ENST00000494123 ZBED3Q96IU2 234 aaPredicted RBP17.57■□□□□ 0.4
BRCA1-223ENST00000494123 TDRD3Q9H7E2 651 aaKnown RBP17.57■□□□□ 0.4
BRCA1-223ENST00000494123 AATFQ9NY61 560 aaKnown RBP eCLIP17.57■□□□□ 0.4
BRCA1-223ENST00000494123 TCRBV5S4A2TA0A5A2 114 aa17.56■□□□□ 0.4
BRCA1-223ENST00000494123 TICAM2Q86XR7 235 aa17.56■□□□□ 0.4
BRCA1-223ENST00000494123 TMOD2Q9NZR1 351 aa17.56■□□□□ 0.4
BRCA1-223ENST00000494123 MAGEB6P1A0A0J9YX57 407 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 CLRN2A0PK11 232 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 HIP1O00291 1037 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 CHGBP05060 677 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 PLCG2P16885 1265 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 SLFNL1Q499Z3 407 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 ANGEL2Q5VTE6 544 aaKnown RBP17.55■□□□□ 0.4
BRCA1-223ENST00000494123 ZC3H15Q8WU90 426 aaKnown RBP17.55■□□□□ 0.4
BRCA1-223ENST00000494123 APPBP2Q92624 585 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 VEZTQ9HBM0 779 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 DIAPH3Q9NSV4 1193 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 USP40Q9NVE5 1235 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 GGA3Q9NZ52 723 aa17.55■□□□□ 0.4
BRCA1-223ENST00000494123 SPDYE2Q495Y8 402 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 CDC42EP5Q6NZY7 148 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 LDHDQ86WU2 507 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 CERS3Q8IU89 383 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 DCPSQ96C86 337 aaKnown RBP17.54■□□□□ 0.4
BRCA1-223ENST00000494123 ZNF70Q9UC06 446 aaPredicted RBP17.54■□□□□ 0.4
BRCA1-223ENST00000494123 ASTN2O75129 1339 aaPredicted RBP17.54■□□□□ 0.4
BRCA1-223ENST00000494123 KIF3CO14782 793 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 POTEIP0CG38 1075 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 POTEJP0CG39 1038 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 DYNLL1P63167 89 aaKnown RBP17.54■□□□□ 0.4
BRCA1-223ENST00000494123 AIDAQ96BJ3 306 aa17.54■□□□□ 0.4
BRCA1-223ENST00000494123 PPP4CP60510 307 aa17.53■□□□□ 0.4
BRCA1-223ENST00000494123 APOBEC3FQ8IUX4 373 aaKnown RBP17.53■□□□□ 0.4
BRCA1-223ENST00000494123 TEX11Q8IYF3 940 aa17.53■□□□□ 0.4
BRCA1-223ENST00000494123 PITPNM2Q9BZ72 1349 aa17.52■□□□□ 0.4
BRCA1-223ENST00000494123 MBD4O95243 580 aa17.52■□□□□ 0.4
BRCA1-223ENST00000494123 CACNB3P54284 484 aa17.52■□□□□ 0.4
BRCA1-223ENST00000494123 TNFAIP1Q13829 316 aa17.52■□□□□ 0.4
BRCA1-223ENST00000494123 ZMYM1Q5SVZ6 1142 aa17.52■□□□□ 0.4
BRCA1-223ENST00000494123 SH3RF3Q8TEJ3 882 aaPredicted RBP17.52■□□□□ 0.4
BRCA1-223ENST00000494123 PUS7LQ9H0K6 701 aaKnown RBP17.52■□□□□ 0.4
BRCA1-223ENST00000494123 TCP10L2B9ZVM9 353 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 TNNI2P48788 182 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 RHBDL3P58872 404 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 NMIQ13287 307 aaPredicted RBP17.51■□□□□ 0.39
BRCA1-223ENST00000494123 SULF1Q8IWU6 871 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 LCORLQ8N3X6 602 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 OSBP2Q969R2 916 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 RIOK1Q9BRS2 568 aaKnown RBP17.51■□□□□ 0.39
BRCA1-223ENST00000494123 ARMT1Q9H993 441 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 HELLSQ9NRZ9 838 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 PGAP2Q9UHJ9 254 aa17.51■□□□□ 0.39
BRCA1-223ENST00000494123 POLR2AP24928 1970 aaKnown RBP17.51■□□□□ 0.39
BRCA1-223ENST00000494123 M0R2C6 588 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 CWC27Q6UX04 472 aaKnown RBP17.5■□□□□ 0.39
BRCA1-223ENST00000494123 FAM227BQ96M60 508 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 CRNKL1Q9BZJ0 848 aaKnown RBP17.5■□□□□ 0.39
BRCA1-223ENST00000494123 A0A0D9SFI3 127 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 GPAA1O43292 621 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 PICALMQ13492 652 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 MAP1SQ66K74 1059 aaPredicted RBP17.5■□□□□ 0.39
BRCA1-223ENST00000494123 CHADLQ6NUI6 762 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 KRT26Q7Z3Y9 468 aa17.5■□□□□ 0.39
BRCA1-223ENST00000494123 SEC62Q99442 399 aaKnown RBP17.5■□□□□ 0.39
BRCA1-223ENST00000494123 CDK5RAP2Q96SN8 1893 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 CHMLP26374 656 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 USP5P45974 858 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 MCMDC2Q4G0Z9 681 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 FKBP1CQ5VVH2 108 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 CASC1Q6TDU7 716 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 CDC37L1Q7L3B6 337 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 RUFY2Q8WXA3 655 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 IDI2Q9BXS1 227 aa17.49■□□□□ 0.39
BRCA1-223ENST00000494123 SCAF8Q9UPN6 1271 aaKnown RBP17.49■□□□□ 0.39
BRCA1-223ENST00000494123 CDC45O75419 566 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 WDHD1O75717 1129 aaPredicted RBP17.48■□□□□ 0.39
BRCA1-223ENST00000494123 TOMM70O94826 608 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 TCP10Q12799 353 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 NFIAQ12857 509 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 SMC1BQ8NDV3 1235 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 TGFBRAP1Q8WUH2 860 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 FOCADQ5VW36 1801 aa17.48■□□□□ 0.39
BRCA1-223ENST00000494123 ADM5C9JUS6 153 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 MFAP1P55081 439 aaKnown RBP17.47■□□□□ 0.39
BRCA1-223ENST00000494123 CCDC129Q6ZRS4 1044 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 USP48Q86UV5 1035 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 FAM83AQ86UY5 434 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 MAPKAPK5Q8IW41 473 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 STRBPQ96SI9 672 aaKnown RBP17.47■□□□□ 0.39
BRCA1-223ENST00000494123 GLIS2Q9BZE0 524 aaPredicted RBP17.47■□□□□ 0.39
BRCA1-223ENST00000494123 DEFB129Q9H1M3 183 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 SLC4A4Q9Y6R1 1079 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 ENTPD3O75355 529 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 GNAT2P19087 354 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 RASA3Q14644 834 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 RBM46Q8TBY0 533 aaKnown RBP17.47■□□□□ 0.39
BRCA1-223ENST00000494123 DDRGK1Q96HY6 314 aa17.47■□□□□ 0.39
BRCA1-223ENST00000494123 DDX4Q9NQI0 724 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms