RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	ZDHHC15	Q96MV8	337 aa		12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	DNAJC2	Q99543	621 aa	Known RBP	12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	RWDD1	Q9H446	243 aa	Predicted RBP	12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	ANTXR1	Q9H6X2	564 aa		12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	LRP2BP	Q9P2M1	347 aa		12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	ZNF70	Q9UC06	446 aa	Predicted RBP	12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	PITPNM2	Q9BZ72	1349 aa		12.54	□□□□□ -0.4
HDAC6-222	ENST00000478095	TMEM88B	A6NKF7	163 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	TCP10L2	B9ZVM9	353 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	CST9	Q5W186	159 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	OTUD7A	Q8TE49	926 aa	Predicted RBP	12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	ZNF384	Q8TF68	577 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	GCC1	Q96CN9	775 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	EDC3	Q96F86	508 aa	Known RBP	12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	PHF12	Q96QT6	1004 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	BOLA2	Q9H3K6	86 aa		12.53	□□□□□ -0.4
HDAC6-222	ENST00000478095	GOLIM4	O00461	696 aa		12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	IDH1	O75874	414 aa	Known RBP	12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	B4GALNT3	Q6L9W6	998 aa		12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	NSUN4	Q96CB9	384 aa	Known RBP	12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	MRI	Q9BWK5	157 aa		12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	DEFB129	Q9H1M3	183 aa		12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	ABT1	Q9ULW3	272 aa	Known RBP	12.52	□□□□□ -0.41
HDAC6-222	ENST00000478095	ATP5J	P18859	108 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	BTD	P43251	543 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	RASA3	Q14644	834 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	CDC42EP5	Q6NZY7	148 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	ECHDC1	Q9NTX5	307 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	TMOD2	Q9NZR1	351 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	MROH7-TTC4	A0A0A0MT08	1334 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	GAK	O14976	1311 aa		12.51	□□□□□ -0.41
HDAC6-222	ENST00000478095	CENPB	P07199	599 aa	Predicted RBP	12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	GSTO1	P78417	241 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	TNFAIP1	Q13829	316 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	PRKG1	Q13976	671 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	NAA16	Q6N069	864 aa	Predicted RBP	12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	CDAN1	Q8IWY9	1227 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	SLF2	Q8IX21	1173 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	SMC5	Q8IY18	1101 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	GPATCH3	Q96I76	525 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	LNPK	Q9C0E8	428 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	TMEM39B	Q9GZU3	492 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	USP40	Q9NVE5	1235 aa		12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	MKRN1	Q9UHC7	482 aa	Known RBP	12.5	□□□□□ -0.41
HDAC6-222	ENST00000478095	NFIA	Q12857	509 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	MOB2	Q70IA6	237 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	ADGRA1	Q86SQ6	560 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	MAGEB6	Q8N7X4	407 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	SPOCK2	Q92563	424 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	FAM163A	Q96GL9	167 aa	Predicted RBP	12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	HAUS7	Q99871	368 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	GBA2	Q9HCG7	927 aa	Predicted RBP	12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	PAG1	Q9NWQ8	432 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	FZD1	Q9UP38	647 aa		12.49	□□□□□ -0.41
HDAC6-222	ENST00000478095	CNTNAP1	P78357	1384 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	GPR75-ASB3	A0A0A6YYF3	556 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	MAP4K4	O95819	1239 aa	Predicted RBP	12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	LDHC	P07864	332 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	MX1	P20591	662 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	CYP7A1	P22680	504 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	TNNI2	P48788	182 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	TCP10	Q12799	353 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	MAP3K12	Q12852	859 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	GRM1	Q13255	1194 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	TTLL12	Q14166	644 aa	Predicted RBP	12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	TTF1	Q15361	905 aa	Predicted RBP	12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	NBPF12	Q5TAG4	269 aa	Predicted RBP	12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	AATF	Q9NY61	560 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	PPP2R3B	Q9Y5P8	575 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	TLL2	Q9Y6L7	1015 aa		12.48	□□□□□ -0.41
HDAC6-222	ENST00000478095	NF2	P35240	595 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	HUNK	P57058	714 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	RHBDL3	P58872	404 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	NUCB1	Q02818	461 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	PICALM	Q13492	652 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	SAPCD2	Q86UD0	394 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	C2orf69	Q8N8R5	385 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	MIGA1	Q8NAN2	632 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	PI4K2B	Q8TCG2	481 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	TEPSIN	Q96N21	525 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	FAM198A	Q9UFP1	575 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	SSC5D	A1L4H1	1573 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	MYH13	Q9UKX3	1938 aa		12.47	□□□□□ -0.41
HDAC6-222	ENST00000478095	TTC41P	Q6P2S7	1318 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	SALL3	Q9BXA9	1300 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	WDHD1	O75717	1129 aa	Predicted RBP	12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	CHGB	P05060	677 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	PDE6A	P16499	860 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	RGS3	P49796	1198 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	DYNLL1	P63167	89 aa	Known RBP	12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	SLFNL1	Q499Z3	407 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	SLC9C2	Q5TAH2	1124 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	CHD1L	Q86WJ1	897 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	ZFPM1	Q8IX07	1006 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	DNAJC5G	Q8N7S2	189 aa		12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	12.46	□□□□□ -0.41
HDAC6-222	ENST00000478095	NOL10	Q9BSC4	688 aa	Known RBP	12.46	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms