RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CYP2E1P05181 493 aaPredicted RBP12.97□□□□□ -0.33
UBR4-208ENST00000459947 APOBEC3HQ6NTF7 200 aaKnown RBP12.96□□□□□ -0.33
UBR4-208ENST00000459947 REM2Q8IYK8 340 aaPredicted RBP12.96□□□□□ -0.33
UBR4-208ENST00000459947 FAM151AQ8WW52 585 aa12.96□□□□□ -0.33
UBR4-208ENST00000459947 PPP1R12BO60237 982 aaPredicted RBP12.96□□□□□ -0.33
UBR4-208ENST00000459947 NUCB1Q02818 461 aa12.96□□□□□ -0.33
UBR4-208ENST00000459947 USP40Q9NVE5 1235 aa12.96□□□□□ -0.33
UBR4-208ENST00000459947 TLL2Q9Y6L7 1015 aa12.96□□□□□ -0.33
UBR4-208ENST00000459947 IDH1O75874 414 aaKnown RBP12.96□□□□□ -0.34
UBR4-208ENST00000459947 BTDP43251 543 aa12.96□□□□□ -0.34
UBR4-208ENST00000459947 CHD1LQ86WJ1 897 aa12.96□□□□□ -0.34
UBR4-208ENST00000459947 SNRKQ9NRH2 765 aa12.96□□□□□ -0.34
UBR4-208ENST00000459947 EGFRP00533 1210 aa12.95□□□□□ -0.34
UBR4-208ENST00000459947 DNAJC2Q99543 621 aaKnown RBP12.95□□□□□ -0.34
UBR4-208ENST00000459947 DEFB129Q9H1M3 183 aa12.95□□□□□ -0.34
UBR4-208ENST00000459947 TDRD3Q9H7E2 651 aaKnown RBP12.95□□□□□ -0.34
UBR4-208ENST00000459947 SMARCA5O60264 1052 aaPredicted RBP12.95□□□□□ -0.34
UBR4-208ENST00000459947 CYP7A1P22680 504 aa12.95□□□□□ -0.34
UBR4-208ENST00000459947 IREB2P48200 963 aaKnown RBP12.95□□□□□ -0.34
UBR4-208ENST00000459947 UBE3CQ15386 1083 aa12.95□□□□□ -0.34
UBR4-208ENST00000459947 RASSF10A6NK89 507 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 ADM5C9JUS6 153 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 CDC42EP5Q6NZY7 148 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 CENPQQ7L2Z9 268 aaPredicted RBP12.94□□□□□ -0.34
UBR4-208ENST00000459947 PIH1D3Q9NQM4 214 aaKnown RBP12.94□□□□□ -0.34
UBR4-208ENST00000459947 CLRN2A0PK11 232 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 GOLIM4O00461 696 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 CCDC102AQ96A19 550 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 BOLA2Q9H3K6 86 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 ABT1Q9ULW3 272 aaKnown RBP12.94□□□□□ -0.34
UBR4-208ENST00000459947 RASA3Q14644 834 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 DIXDC1Q155Q3 683 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 GRIK5Q16478 980 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 MAP3K11Q16584 847 aa12.94□□□□□ -0.34
UBR4-208ENST00000459947 KBTBD3Q8NAB2 608 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 DDRGK1Q96HY6 314 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 DHX36Q9H2U1 1008 aaKnown RBP12.93□□□□□ -0.34
UBR4-208ENST00000459947 OSBPL3Q9H4L5 887 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 CNTNAP1P78357 1384 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 MYH7P12883 1935 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 TEX11Q8IYF3 940 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 CRNKL1Q9BZJ0 848 aaKnown RBP12.93□□□□□ -0.34
UBR4-208ENST00000459947 PI16Q6UXB8 463 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 EVI5LQ96CN4 794 aa12.93□□□□□ -0.34
UBR4-208ENST00000459947 HIP1O00291 1037 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 PDE6AP16499 860 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 TTLL12Q14166 644 aaPredicted RBP12.92□□□□□ -0.34
UBR4-208ENST00000459947 DEFB115Q30KQ5 88 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 TBC1D9Q6ZT07 1266 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 MAGEB6Q8N7X4 407 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 GINM1Q9NU53 330 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 SALL3Q9BXA9 1300 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 AMOTL1Q8IY63 956 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 ZNF408Q9H9D4 720 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 POLR2AP24928 1970 aaKnown RBP12.92□□□□□ -0.34
UBR4-208ENST00000459947 MAGEB6P1A0A0J9YX57 407 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 TCP10L2B9ZVM9 353 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 PDE1AP54750 535 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 ZNF341Q9BYN7 854 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 ATRNL1Q5VV63 1379 aa12.92□□□□□ -0.34
UBR4-208ENST00000459947 TRAF5O00463 557 aa12.91□□□□□ -0.34
UBR4-208ENST00000459947 ADD2P35612 726 aa12.91□□□□□ -0.34
UBR4-208ENST00000459947 SLC9C2Q5TAH2 1124 aa12.91□□□□□ -0.34
UBR4-208ENST00000459947 HLA-DOAP06340 250 aa12.91□□□□□ -0.34
UBR4-208ENST00000459947 ASTN2O75129 1339 aaPredicted RBP12.91□□□□□ -0.34
UBR4-208ENST00000459947 GNAT2P19087 354 aa12.91□□□□□ -0.34
UBR4-208ENST00000459947 HUNKP57058 714 aa12.91□□□□□ -0.34
UBR4-208ENST00000459947 IGHDP01880 384 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 KLRG1Q96E93 195 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 TBC1D2Q9BYX2 928 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 LNPKQ9C0E8 428 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 RGS3P49796 1198 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 IRX6P78412 446 aaPredicted RBP12.9□□□□□ -0.34
UBR4-208ENST00000459947 RGMBQ6NW40 437 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 PI4K2BQ8TCG2 481 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 RNF113AO15541 343 aaKnown RBP12.9□□□□□ -0.34
UBR4-208ENST00000459947 MFAP1P55081 439 aaKnown RBP12.9□□□□□ -0.34
UBR4-208ENST00000459947 RHBDL3P58872 404 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 ANKRD13AQ8IZ07 590 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 APPBP2Q92624 585 aa12.9□□□□□ -0.34
UBR4-208ENST00000459947 MAP2K2P36507 400 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 NOGQ13253 232 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 CST9Q5W186 159 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 SAPCD2Q86UD0 394 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 FSD1Q9BTV5 496 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 TRIM34Q9BYJ4 488 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 HERC5Q9UII4 1024 aaKnown RBP12.89□□□□□ -0.35
UBR4-208ENST00000459947 THSD7BQ9C0I4 1608 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 TBC1D12O60347 775 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 USP5P45974 858 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 TTC6Q86TZ1 520 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 CSADQ9Y600 493 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 ZNF532Q9HCE3 1301 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 FOCADQ5VW36 1801 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 CCDC136Q96JN2 1154 aa12.89□□□□□ -0.35
UBR4-208ENST00000459947 OSBPL5Q9H0X9 879 aaPredicted RBP12.89□□□□□ -0.35
UBR4-208ENST00000459947 WDHD1O75717 1129 aaPredicted RBP12.88□□□□□ -0.35
UBR4-208ENST00000459947 GIMAP6Q6P9H5 292 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 FOXP4Q8IVH2 680 aaPredicted RBP12.88□□□□□ -0.35
UBR4-208ENST00000459947 ANTXR1Q9H6X2 564 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms