RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 NOL10Q9BSC4 688 aaKnown RBP31.88■■■□□ 2.69
MSX1-201ENST00000382723 SUGT1Q9Y2Z0 365 aa31.88■■■□□ 2.69
MSX1-201ENST00000382723 USP17L3A6NCW0 530 aa31.88■■■□□ 2.69
MSX1-201ENST00000382723 USP17L4A6NCW7 530 aa31.88■■■□□ 2.69
MSX1-201ENST00000382723 USP17L1Q7RTZ2 530 aa31.88■■■□□ 2.69
MSX1-201ENST00000382723 CRNKL1Q9BZJ0 848 aaKnown RBP31.88■■■□□ 2.69
MSX1-201ENST00000382723 ZMYM6O95789 1325 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 SLF2Q8IX21 1173 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 TTF2Q9UNY4 1162 aaKnown RBP31.87■■■□□ 2.69
MSX1-201ENST00000382723 BRCA1P38398 1863 aaKnown RBP31.87■■■□□ 2.69
MSX1-201ENST00000382723 YDJCA8MPS7 323 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 BAG3O95817 575 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 RPS6KB1P23443 525 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 AK2P54819 239 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 TCEANC2Q96MN5 208 aa31.87■■■□□ 2.69
MSX1-201ENST00000382723 DACT2Q5SW24 774 aa31.86■■■□□ 2.69
MSX1-201ENST00000382723 BTDP43251 543 aa31.85■■■□□ 2.69
MSX1-201ENST00000382723 MCM2P49736 904 aa31.85■■■□□ 2.69
MSX1-201ENST00000382723 SH3RF3Q8TEJ3 882 aaPredicted RBP31.85■■■□□ 2.69
MSX1-201ENST00000382723 NBPF3Q9H094 633 aa31.85■■■□□ 2.69
MSX1-201ENST00000382723 TAOK3Q9H2K8 898 aa31.85■■■□□ 2.69
MSX1-201ENST00000382723 IL27Q8NEV9 243 aa31.85■■■□□ 2.69
MSX1-201ENST00000382723 LARP6Q9BRS8 491 aaKnown RBP31.85■■■□□ 2.69
MSX1-201ENST00000382723 IARSP41252 1262 aaKnown RBP31.84■■■□□ 2.69
MSX1-201ENST00000382723 HSP90AA1P07900 732 aaKnown RBP31.83■■■□□ 2.69
MSX1-201ENST00000382723 SCNN1DP51172 638 aa31.83■■■□□ 2.69
MSX1-201ENST00000382723 TBC1D10CQ8IV04 446 aa31.83■■■□□ 2.69
MSX1-201ENST00000382723 FHDC1Q9C0D6 1143 aaPredicted RBP31.83■■■□□ 2.69
MSX1-201ENST00000382723 VPS33BQ9H267 617 aa31.83■■■□□ 2.69
MSX1-201ENST00000382723 PPP4CP60510 307 aa31.83■■■□□ 2.69
MSX1-201ENST00000382723 FAM163AQ96GL9 167 aaPredicted RBP31.83■■■□□ 2.69
MSX1-201ENST00000382723 FOXD4L1Q9NU39 408 aa31.83■■■□□ 2.69
MSX1-201ENST00000382723 GPR75-ASB3A0A0A6YYF3 556 aa31.82■■■□□ 2.68
MSX1-201ENST00000382723 NFKBIEO00221 500 aa31.82■■■□□ 2.68
MSX1-201ENST00000382723 CTDSPL2Q05D32 466 aa31.82■■■□□ 2.68
MSX1-201ENST00000382723 KIAA0825Q8IV33 1275 aa31.82■■■□□ 2.68
MSX1-201ENST00000382723 SLKQ9H2G2 1235 aaPredicted RBP31.82■■■□□ 2.68
MSX1-201ENST00000382723 GAKO14976 1311 aa31.82■■■□□ 2.68
MSX1-201ENST00000382723 COL4A5P29400 1685 aa31.81■■■□□ 2.68
MSX1-201ENST00000382723 SCN9AQ15858 1988 aa31.81■■■□□ 2.68
MSX1-201ENST00000382723 HMGB1P09429 215 aaKnown RBP31.81■■■□□ 2.68
MSX1-201ENST00000382723 FKBP1AP62942 108 aaKnown RBP31.81■■■□□ 2.68
MSX1-201ENST00000382723 DAGLAQ9Y4D2 1042 aa31.81■■■□□ 2.68
MSX1-201ENST00000382723 MINDY4BA8MYZ0 360 aa31.81■■■□□ 2.68
MSX1-201ENST00000382723 NIM1KQ8IY84 436 aa31.81■■■□□ 2.68
MSX1-201ENST00000382723 TMX3Q96JJ7 454 aa31.81■■■□□ 2.68
MSX1-201ENST00000382723 RAD17O75943 681 aa31.8■■■□□ 2.68
MSX1-201ENST00000382723 USP5P45974 858 aa31.8■■■□□ 2.68
MSX1-201ENST00000382723 GIMAP6Q6P9H5 292 aa31.8■■■□□ 2.68
MSX1-201ENST00000382723 DCP1AQ9NPI6 582 aaPredicted RBP31.8■■■□□ 2.68
MSX1-201ENST00000382723 ATP8A2Q9NTI2 1148 aa31.8■■■□□ 2.68
MSX1-201ENST00000382723 MYH2Q9UKX2 1941 aa31.8■■■□□ 2.68
MSX1-201ENST00000382723 STK11IPQ8N1F8 1099 aa31.79■■■□□ 2.68
MSX1-201ENST00000382723 DHX32Q7L7V1 743 aaKnown RBP31.79■■■□□ 2.68
MSX1-201ENST00000382723 RALYLQ86SE5 291 aaKnown RBP31.79■■■□□ 2.68
MSX1-201ENST00000382723 PPARAQ07869 468 aa31.78■■■□□ 2.68
MSX1-201ENST00000382723 NCOA7Q8NI08 942 aa31.78■■■□□ 2.68
MSX1-201ENST00000382723 LRRC2Q9BYS8 371 aa31.78■■■□□ 2.68
MSX1-201ENST00000382723 INCENPQ9NQS7 918 aa31.78■■■□□ 2.68
MSX1-201ENST00000382723 CYP2D7A0A087X1C5 515 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 CHST3Q7LGC8 479 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 CERS3Q8IU89 383 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 TGFBRAP1Q8WUH2 860 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 TEKT1Q969V4 418 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 ZNRF3Q9ULT6 936 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 LIMCH1Q9UPQ0 1083 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 TRDNQ13061 729 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 CTR9Q6PD62 1173 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 TEX11Q8IYF3 940 aa31.77■■■□□ 2.68
MSX1-201ENST00000382723 USP17L12C9JPN9 530 aa31.76■■■□□ 2.67
MSX1-201ENST00000382723 USP17L21D6R901 530 aa31.76■■■□□ 2.67
MSX1-201ENST00000382723 PLCG2P16885 1265 aa31.76■■■□□ 2.67
MSX1-201ENST00000382723 RASSF7Q02833 373 aa31.76■■■□□ 2.67
MSX1-201ENST00000382723 Q6ZUG5 572 aa31.76■■■□□ 2.67
MSX1-201ENST00000382723 FER1L6Q2WGJ9 1857 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 NEDD4P46934 1319 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 SMIM22K7EJ46 135 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 PSMD14O00487 310 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 CRKP46108 304 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 RHBDL3P58872 404 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 FGD1P98174 961 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 EXOSC10Q01780 885 aaKnown RBP31.75■■■□□ 2.67
MSX1-201ENST00000382723 TOB2Q14106 344 aaPredicted RBP31.75■■■□□ 2.67
MSX1-201ENST00000382723 JDP2Q8WYK2 163 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 ALDH8A1Q9H2A2 487 aaPredicted RBP31.75■■■□□ 2.67
MSX1-201ENST00000382723 MCM9Q9NXL9 1143 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 TACC3Q9Y6A5 838 aa31.75■■■□□ 2.67
MSX1-201ENST00000382723 ANKRD1Q15327 319 aa31.74■■■□□ 2.67
MSX1-201ENST00000382723 AKNAD1Q5T1N1 836 aa31.74■■■□□ 2.67
MSX1-201ENST00000382723 HHIPL2Q6UWX4 724 aa31.74■■■□□ 2.67
MSX1-201ENST00000382723 MAPKAPK5Q8IW41 473 aa31.74■■■□□ 2.67
MSX1-201ENST00000382723 MB21D2Q8IYB1 491 aaPredicted RBP31.74■■■□□ 2.67
MSX1-201ENST00000382723 LAMA4Q16363 1823 aa31.73■■■□□ 2.67
MSX1-201ENST00000382723 SLC4A8Q2Y0W8 1093 aa31.73■■■□□ 2.67
MSX1-201ENST00000382723 MFSD6Q6ZSS7 791 aa31.73■■■□□ 2.67
MSX1-201ENST00000382723 RSBN1LQ6PCB5 846 aaPredicted RBP31.73■■■□□ 2.67
MSX1-201ENST00000382723 ZNF646O15015 1829 aaPredicted RBP31.72■■■□□ 2.67
MSX1-201ENST00000382723 B4E1Z4 1266 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 USP17L8P0C7I0 530 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 CYP2D6P10635 497 aa31.72■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms