RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 IRX5P78411 483 aaPredicted RBP24.35■■□□□ 1.49
UPF3A-202ENST00000375299 WASHC4Q2M389 1173 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 CABLES1Q8TDN4 633 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 GLI3P10071 1580 aa24.34■■□□□ 1.49
UPF3A-202ENST00000375299 ZBTB22O15209 634 aa24.34■■□□□ 1.49
UPF3A-202ENST00000375299 SEC31AO94979 1220 aaKnown RBP24.34■■□□□ 1.49
UPF3A-202ENST00000375299 ATF3P18847 181 aa24.34■■□□□ 1.49
UPF3A-202ENST00000375299 FKBP4Q02790 459 aaKnown RBP eCLIP24.34■■□□□ 1.49
UPF3A-202ENST00000375299 ZNF594Q96JF6 807 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-202ENST00000375299 CPDO75976 1380 aa24.34■■□□□ 1.49
UPF3A-202ENST00000375299 CIAO1O76071 339 aa24.34■■□□□ 1.49
UPF3A-202ENST00000375299 ZFYP08048 801 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-202ENST00000375299 PTPAQ15257 358 aa24.34■■□□□ 1.49
UPF3A-202ENST00000375299 CWC25Q9NXE8 425 aaPredicted RBP24.34■■□□□ 1.49
UPF3A-202ENST00000375299 PLEKHG2Q9H7P9 1386 aa24.33■■□□□ 1.49
UPF3A-202ENST00000375299 NUP188Q5SRE5 1749 aa24.33■■□□□ 1.49
UPF3A-202ENST00000375299 CHRNA2Q15822 529 aa24.33■■□□□ 1.49
UPF3A-202ENST00000375299 VPS37DQ86XT2 251 aa24.33■■□□□ 1.49
UPF3A-202ENST00000375299 UBXN6Q9BZV1 441 aa24.33■■□□□ 1.49
UPF3A-202ENST00000375299 FANCLQ9NW38 375 aa24.33■■□□□ 1.49
UPF3A-202ENST00000375299 ECM29Q5VYK3 1845 aa24.33■■□□□ 1.48
UPF3A-202ENST00000375299 GOLGA6L9A6NEM1 432 aa24.32■■□□□ 1.48
UPF3A-202ENST00000375299 RESP18Q5W5W9 173 aa24.32■■□□□ 1.48
UPF3A-202ENST00000375299 ALG1Q9BT22 464 aa24.32■■□□□ 1.48
UPF3A-202ENST00000375299 PKD1L3Q7Z443 1732 aa24.32■■□□□ 1.48
UPF3A-202ENST00000375299 METTL16Q86W50 562 aaKnown RBP24.32■■□□□ 1.48
UPF3A-202ENST00000375299 ZMYM6O95789 1325 aa24.32■■□□□ 1.48
UPF3A-202ENST00000375299 CASQ1P31415 396 aa24.31■■□□□ 1.48
UPF3A-202ENST00000375299 AIFM3Q96NN9 605 aa24.31■■□□□ 1.48
UPF3A-202ENST00000375299 INTS13Q9NVM9 706 aa24.31■■□□□ 1.48
UPF3A-202ENST00000375299 MYH7P12883 1935 aa24.31■■□□□ 1.48
UPF3A-202ENST00000375299 POLR3GO15318 223 aaPredicted RBP24.31■■□□□ 1.48
UPF3A-202ENST00000375299 HNRNPH2P55795 449 aaKnown RBP24.31■■□□□ 1.48
UPF3A-202ENST00000375299 CABP4P57796 275 aa24.31■■□□□ 1.48
UPF3A-202ENST00000375299 PTPN21Q16825 1174 aa24.31■■□□□ 1.48
UPF3A-202ENST00000375299 FAM177A1Q8N128 213 aaPredicted RBP24.31■■□□□ 1.48
UPF3A-202ENST00000375299 ZNF213O14771 459 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 TBC1D8O95759 1140 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 MAP3K9P80192 1104 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 TBX2Q13207 712 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-202ENST00000375299 TTC39AQ5SRH9 613 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 CC2D1AQ6P1N0 951 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-202ENST00000375299 GPR161Q8N6U8 529 aaKnown RBP24.3■■□□□ 1.48
UPF3A-202ENST00000375299 APPBP2Q92624 585 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 MAP3K14Q99558 947 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 BAG1Q99933 345 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-202ENST00000375299 TULP2O00295 520 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 KRT40Q6A162 431 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 BBXQ8WY36 941 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-202ENST00000375299 PUS3Q9BZE2 481 aaKnown RBP24.3■■□□□ 1.48
UPF3A-202ENST00000375299 ATG3Q9NT62 314 aa24.3■■□□□ 1.48
UPF3A-202ENST00000375299 SASH3O75995 380 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 GTF2E1P29083 439 aaPredicted RBP24.29■■□□□ 1.48
UPF3A-202ENST00000375299 KRBA2Q6ZNG9 492 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 MRFAP1Q9Y605 127 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 CUTAO60888 179 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 GNG11P61952 73 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 GNL2Q13823 731 aaKnown RBP24.29■■□□□ 1.48
UPF3A-202ENST00000375299 CCDC102BQ68D86 513 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 CNNM3Q8NE01 707 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 CLIC6Q96NY7 704 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 PUS7LQ9H0K6 701 aaKnown RBP24.29■■□□□ 1.48
UPF3A-202ENST00000375299 EPC1Q9H2F5 836 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 CEP126Q9P2H0 1117 aa24.29■■□□□ 1.48
UPF3A-202ENST00000375299 CDKL5O76039 1030 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 PPP2R3AQ06190 1150 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 LONRF3Q496Y0 759 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 WDR24Q96S15 920 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 PCDHA5Q9Y5H7 936 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 STX10O60499 249 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 METAP2P50579 478 aaKnown RBP eCLIP24.28■■□□□ 1.48
UPF3A-202ENST00000375299 HSP90AB3PQ58FF7 597 aa24.28■■□□□ 1.48
UPF3A-202ENST00000375299 RSRC2Q7L4I2 434 aaKnown RBP24.28■■□□□ 1.48
UPF3A-202ENST00000375299 FOXP4Q8IVH2 680 aaPredicted RBP24.28■■□□□ 1.48
UPF3A-202ENST00000375299 NBPF26B4DH59 902 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 OAS2P29728 719 aaKnown RBP24.27■■□□□ 1.48
UPF3A-202ENST00000375299 PDE4BQ07343 736 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 NBPF14Q5TI25 921 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 NBPF10Q6P3W6 841 aaKnown RBP24.27■■□□□ 1.48
UPF3A-202ENST00000375299 TXLNBQ8N3L3 684 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 NBPF15Q8N660 670 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 ANGEL1Q9UNK9 670 aaKnown RBP24.27■■□□□ 1.48
UPF3A-202ENST00000375299 TNS3Q68CZ2 1445 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 ADORA1P30542 326 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 TTLL7Q6ZT98 887 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.27■■□□□ 1.48
UPF3A-202ENST00000375299 KCNH3Q9ULD8 1083 aa24.27■■□□□ 1.48
UPF3A-202ENST00000375299 GPAA1O43292 621 aa24.26■■□□□ 1.47
UPF3A-202ENST00000375299 KIFC2Q96AC6 838 aa24.26■■□□□ 1.47
UPF3A-202ENST00000375299 XAGE2Q96GT9 111 aa24.26■■□□□ 1.47
UPF3A-202ENST00000375299 BMP6P22004 513 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 CDC27P30260 824 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 PDILTQ8N807 584 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 TC2NQ8N9U0 490 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 DCCP43146 1447 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 CDK11BP21127 795 aaKnown RBP24.25■■□□□ 1.47
UPF3A-202ENST00000375299 TRDNQ13061 729 aa24.25■■□□□ 1.47
UPF3A-202ENST00000375299 SMC1AQ14683 1233 aaKnown RBP24.25■■□□□ 1.47
UPF3A-202ENST00000375299 CPLX2Q6PUV4 134 aaKnown RBP24.25■■□□□ 1.47
UPF3A-202ENST00000375299 TOGARAM2Q6ZUX3 1019 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms