RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 IFT81Q8WYA0 676 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 NAPGQ99747 312 aaPredicted RBP12.99□□□□□ -0.33
VPS39-201ENST00000318006 LRRC27Q9C0I9 530 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 ERVK-7P63135 1459 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 PLA2R1Q13018 1463 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 CCDC160A6NGH7 325 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 UBAP1LF5GYI3 381 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 KDM5CP41229 1560 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 TPTE2Q6XPS3 522 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 BTG4Q9NY30 223 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 KAT6BQ8WYB5 2073 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 KDM5DQ9BY66 1539 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 KIF24Q5T7B8 1368 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 TSPY3P0CV98 308 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 TSPY8P0CW00 308 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 EIF4A1P60842 406 aaKnown RBP12.98□□□□□ -0.33
VPS39-201ENST00000318006 APOBRQ0VD83 1088 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 TNNI3KQ59H18 835 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 PAF1Q8N7H5 531 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 FAM89AQ96GI7 184 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 HELLSQ9NRZ9 838 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 FPGT-TNNI3KV9GXZ4 949 aa12.98□□□□□ -0.33
VPS39-201ENST00000318006 MAGEB6P1A0A0J9YX57 407 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 CTNNA2P26232 953 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 TIMM10P62072 90 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 TNNC1P63316 161 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 CHST3Q7LGC8 479 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 C8orf37Q96NL8 207 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 ABCC4O15439 1325 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 CCDC172P0C7W6 258 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 GNAQP50148 359 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 PAIP2Q9BPZ3 127 aaKnown RBP12.97□□□□□ -0.33
VPS39-201ENST00000318006 STIM2Q9P246 746 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 LUC7L2Q9Y383 392 aaKnown RBP12.97□□□□□ -0.33
VPS39-201ENST00000318006 CFAP74Q9C0B2 1584 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 PRPHP41219 470 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 BRAPQ7Z569 592 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 PPFIBP2Q8ND30 876 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 IFT74Q96LB3 600 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 TTF2Q9UNY4 1162 aaKnown RBP12.97□□□□□ -0.33
VPS39-201ENST00000318006 MYOM2P54296 1465 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 WDR66Q8TBY9 1149 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 LMBR1Q8WVP7 490 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 ZNF622Q969S3 477 aaKnown RBP eCLIP12.97□□□□□ -0.337e-7■■■□□ 14.8
VPS39-201ENST00000318006 CABP5Q9NP86 173 aa12.97□□□□□ -0.33
VPS39-201ENST00000318006 RBM28Q9NW13 759 aaKnown RBP12.97□□□□□ -0.33
VPS39-201ENST00000318006 PTPDC1A2A3K4 754 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 SETDB1Q15047 1291 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 CCDC122Q5T0U0 273 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 LMNTD2Q8IXW0 634 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 MAGEB6Q8N7X4 407 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 KLHDC4Q8TBB5 520 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 DBNDD2Q9BQY9 259 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 IKBKGQ9Y6K9 419 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 CLGNO14967 610 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 MXRA7P84157 204 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 SGSM2O43147 1006 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 STAT6P42226 847 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 MAP3K9P80192 1104 aa12.96□□□□□ -0.33
VPS39-201ENST00000318006 ARHGAP6O43182 974 aa12.96□□□□□ -0.34
VPS39-201ENST00000318006 CPA1P15085 419 aa12.96□□□□□ -0.34
VPS39-201ENST00000318006 UBXN1Q04323 297 aa12.96□□□□□ -0.34
VPS39-201ENST00000318006 SUCLG2Q96I99 432 aa12.96□□□□□ -0.34
VPS39-201ENST00000318006 SMC6Q96SB8 1091 aa12.96□□□□□ -0.34
VPS39-201ENST00000318006 EHMT1Q9H9B1 1298 aa12.96□□□□□ -0.34
VPS39-201ENST00000318006 ZBTB16Q05516 673 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 GCKRQ14397 625 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 RTCBQ9Y3I0 505 aaKnown RBP12.95□□□□□ -0.34
VPS39-201ENST00000318006 CDC42BPBQ9Y5S2 1711 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 GPR161Q8N6U8 529 aaKnown RBP12.95□□□□□ -0.34
VPS39-201ENST00000318006 DHX58Q96C10 678 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 ZNF496Q96IT1 587 aaPredicted RBP12.95□□□□□ -0.34
VPS39-201ENST00000318006 TSGA10Q9BZW7 698 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 BUB1BO60566 1050 aaPredicted RBP12.95□□□□□ -0.34
VPS39-201ENST00000318006 GADD45BO75293 160 aaPredicted RBP12.95□□□□□ -0.34
VPS39-201ENST00000318006 STX17P56962 302 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 ZNF804AQ7Z570 1209 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 TRMT2AQ8IZ69 625 aaKnown RBP12.95□□□□□ -0.34
VPS39-201ENST00000318006 MIGA1Q8NAN2 632 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 PPP1R14CQ8TAE6 165 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 TLDC2A0PJX2 215 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 CALM1P0DP23 149 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 CALM2P0DP24 149 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 CALM3P0DP25 149 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 ATP11AP98196 1134 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 FANCCQ00597 558 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 GAS2L3Q86XJ1 694 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 FMNL3Q8IVF7 1028 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 PLEKHF1Q96S99 279 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 MMRN2Q9H8L6 949 aa12.95□□□□□ -0.34
VPS39-201ENST00000318006 MLH3Q9UHC1 1453 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 A1BGP04217 495 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 BRD3Q15059 726 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 IL17REQ8NFR9 667 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 CDCA7Q9BWT1 371 aaPredicted RBP12.94□□□□□ -0.34
VPS39-201ENST00000318006 ELP1O95163 1332 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 FAM135BQ49AJ0 1406 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 GOLGA6BA6NDN3 693 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 SH3TC1Q8TE82 1336 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 TSPOAP1O95153 1857 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms