RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CTNND2Q9UQB3 1225 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 RASA3Q14644 834 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 PRPF31Q8WWY3 499 aaKnown RBP15.5■□□□□ 0.07
CSPG4-201ENST00000308508 NBPF6Q5VWK0 638 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 PPP1R21Q6ZMI0 780 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 NBPF4Q96M43 638 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 TEX13AQ9BXU3 409 aaPredicted RBP15.5■□□□□ 0.07
CSPG4-201ENST00000308508 RALGAPBQ86X10 1494 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.49■□□□□ 0.07
CSPG4-201ENST00000308508 GNAT2P19087 354 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 ANKRD20A3Q5VUR7 823 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 SMARCC2Q8TAQ2 1214 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 PPANQ9NQ55 473 aaKnown RBP15.49■□□□□ 0.07
CSPG4-201ENST00000308508 SLC4A4Q9Y6R1 1079 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 ZRANB1Q9UGI0 708 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 SECISBP2LQ93073 1101 aaKnown RBP15.49■□□□□ 0.07
CSPG4-201ENST00000308508 STX10O60499 249 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 HIP1RO75146 1068 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 CFAP221Q4G0U5 840 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 COG7P83436 770 aa15.49■□□□□ 0.07
CSPG4-201ENST00000308508 RUFY3Q7L099 469 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 SYCE1Q8N0S2 351 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 CARD6Q9BX69 1037 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 DDX21Q9NR30 783 aaKnown RBP eCLIP15.48■□□□□ 0.07
CSPG4-201ENST00000308508 PARP2Q9UGN5 583 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 RNF40O75150 1001 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 WDR44Q5JSH3 913 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 CNNM4Q6P4Q7 775 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 RPGRIP1Q96KN7 1286 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 ATP2A3Q93084 1043 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 TTC41PQ6P2S7 1318 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 LIN9Q5TKA1 542 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 AK2P54819 239 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 OPHN1O60890 802 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 KRT5P13647 590 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 SLC4A8Q2Y0W8 1093 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 HAUS7Q99871 368 aa15.48■□□□□ 0.07
CSPG4-201ENST00000308508 EPRSP07814 1512 aaKnown RBP15.48■□□□□ 0.07
CSPG4-201ENST00000308508 RAD50Q92878 1312 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 VGLL3A8MV65 326 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 SYNRGQ9UMZ2 1314 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 TBC1D8BQ0IIM8 1120 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 TMCO4Q5TGY1 634 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 ASIC2Q16515 512 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 SV2BQ7L1I2 683 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 ZKSCAN3Q9BRR0 538 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 TRIM4Q9C037 500 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 LARSQ9P2J5 1176 aaKnown RBP15.47■□□□□ 0.07
CSPG4-201ENST00000308508 C6orf229H3BNL8 230 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 RBBP5Q15291 538 aaKnown RBP15.47■□□□□ 0.07
CSPG4-201ENST00000308508 MPRIPQ6WCQ1 1025 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 STK38LQ9Y2H1 464 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 TMTC1Q8IUR5 882 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 TNFAIP3P21580 790 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 THEGQ9P2T0 379 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 CAPN7Q9Y6W3 813 aa15.47■□□□□ 0.07
CSPG4-201ENST00000308508 FAM212AQ96EL1 285 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 NCAPGQ9BPX3 1015 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 RAB17Q9H0T7 212 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 PI4KAP2A4QPH2 592 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 ARHGAP6O43182 974 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 PLCD1P51178 756 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 PI4KAP1Q8N8J0 262 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 TCEANC2Q96MN5 208 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 NUTM2BA6NNL0 878 aaPredicted RBP15.46■□□□□ 0.07
CSPG4-201ENST00000308508 NUTM2EB1AL46 878 aaPredicted RBP15.46■□□□□ 0.07
CSPG4-201ENST00000308508 B4DLN1 442 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 MRPL12P52815 198 aaKnown RBP15.46■□□□□ 0.07
CSPG4-201ENST00000308508 TRIM68Q6AZZ1 485 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 BANK1Q8NDB2 785 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 ASIC3Q9UHC3 531 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 ARAP1Q96P48 1450 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 DNAJC8O75937 253 aaPredicted RBP15.46■□□□□ 0.07
CSPG4-201ENST00000308508 TROVE2P10155 538 aaKnown RBP eCLIP15.46■□□□□ 0.07
CSPG4-201ENST00000308508 CCDC152Q4G0S7 254 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 RSPH3Q86UC2 560 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 NAP1L4Q99733 375 aaKnown RBP15.46■□□□□ 0.07
CSPG4-201ENST00000308508 MBIPQ9NS73 344 aa15.46■□□□□ 0.07
CSPG4-201ENST00000308508 CYP7A1P22680 504 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 RILPQ96NA2 401 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 HAUS8Q9BT25 410 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 PTPDC1A2A3K4 754 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 BRD3Q15059 726 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 C8orf34Q49A92 452 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 SLC9C1Q4G0N8 1177 aa15.46■□□□□ 0.06
CSPG4-201ENST00000308508 PTPN23Q9H3S7 1636 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 RPAINQ86UA6 219 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 TRAF5O00463 557 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 IRX5P78411 483 aaPredicted RBP15.45■□□□□ 0.06
CSPG4-201ENST00000308508 HGSO14964 777 aaPredicted RBP15.45■□□□□ 0.06
CSPG4-201ENST00000308508 RBSNQ9H1K0 784 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 RIPOR2Q9Y4F9 1068 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 ZNF75DP51815 510 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 RLBP1P12271 317 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 KRT15P19012 456 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 KLHL14Q9P2G3 628 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 SLC8A3P57103 927 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 P3H4Q92791 437 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 PAG1Q9NWQ8 432 aa15.45■□□□□ 0.06
CSPG4-201ENST00000308508 GPTP24298 496 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms