RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 BAG1Q99933 345 aaPredicted RBP17.5■□□□□ 0.39
SHH-201ENST00000297261 COPRSQ9NQ92 184 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 USP21Q9UK80 565 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 KNDC1Q76NI1 1749 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 PDE8AO60658 829 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 ZFYP08048 801 aaPredicted RBP17.5■□□□□ 0.39
SHH-201ENST00000297261 SSRP1Q08945 709 aaKnown RBP17.5■□□□□ 0.39
SHH-201ENST00000297261 SPECC1Q5M775 1068 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 GNPATO15228 680 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 TDRD12Q587J7 1177 aaKnown RBP17.5■□□□□ 0.39
SHH-201ENST00000297261 RNF113AO15541 343 aaKnown RBP17.49■□□□□ 0.39
SHH-201ENST00000297261 JAK2O60674 1132 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 ZSCAN26Q16670 478 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 XAGE2Q96GT9 111 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 MTMR6Q9Y217 621 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 RTCBQ9Y3I0 505 aaKnown RBP17.49■□□□□ 0.39
SHH-201ENST00000297261 NR1I2O75469 434 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 LRRC24Q50LG9 513 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 CACNA2D4Q7Z3S7 1137 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 NBPF11Q86T75 865 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 NLRP3Q96P20 1036 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 ATRIPQ8WXE1 791 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 CAPZA3Q96KX2 299 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 MYL5Q02045 173 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 MAATS1Q7Z4T9 603 aa17.49■□□□□ 0.39
SHH-201ENST00000297261 MAP3K15Q6ZN16 1313 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 ME3Q16798 604 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 EPHA10Q5JZY3 1008 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 SAMD1Q6SPF0 538 aaPredicted RBP17.48■□□□□ 0.39
SHH-201ENST00000297261 NCOA7Q8NI08 942 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 RABEP2Q9H5N1 569 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 CCDC196A0A1B0GTZ2 297 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 WDHD1O75717 1129 aaPredicted RBP17.48■□□□□ 0.39
SHH-201ENST00000297261 FKBP15Q5T1M5 1219 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 NCOA5Q9HCD5 579 aaKnown RBP17.48■□□□□ 0.39
SHH-201ENST00000297261 GUCA1BQ9UMX6 200 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 ATP5JP18859 108 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 FANCCQ00597 558 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 TMEM67Q5HYA8 995 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 OTUD7BQ6GQQ9 843 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 HDXQ7Z353 690 aa17.48■□□□□ 0.39
SHH-201ENST00000297261 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHH-201ENST00000297261 LOC102724428A0A0B4J2F2 783 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 SIK1P57059 783 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 PARP10Q53GL7 1025 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 CCNL1Q9UK58 526 aaPredicted RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 SOS2Q07890 1332 aaPredicted RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 KDM4FA0A1W2PPD8 638 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 ZEB2O60315 1214 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 ZBTB38Q8NAP3 1195 aaPredicted RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 RPGRQ92834 1020 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 MTIF2P46199 727 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 IFFO1Q0D2I5 559 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 XPO4Q9C0E2 1151 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 DCCP43146 1447 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 SLC27A2O14975 620 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 SASH1O94885 1247 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 PCCAP05165 728 aaPredicted RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 NEFHP12036 1026 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 SMC1AQ14683 1233 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 GIGYF2Q6Y7W6 1299 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 DHX32Q7L7V1 743 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 KBTBD3Q8NAB2 608 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 CACTINQ8WUQ7 758 aaKnown RBP17.47■□□□□ 0.39
SHH-201ENST00000297261 PDLIM2Q96JY6 352 aa17.47■□□□□ 0.39
SHH-201ENST00000297261 RPS6KB1P23443 525 aa17.46■□□□□ 0.39
SHH-201ENST00000297261 DBNLQ9UJU6 430 aaKnown RBP17.46■□□□□ 0.39
SHH-201ENST00000297261 MON2Q7Z3U7 1717 aa17.46■□□□□ 0.39
SHH-201ENST00000297261 TRIM21P19474 475 aaKnown RBP17.46■□□□□ 0.39
SHH-201ENST00000297261 DYDC1Q8WWB3 177 aa17.46■□□□□ 0.39
SHH-201ENST00000297261 PUS3Q9BZE2 481 aaKnown RBP17.46■□□□□ 0.39
SHH-201ENST00000297261 ATP10DQ9P241 1426 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 CEP57Q86XR8 500 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 LRRC8AQ8IWT6 810 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 NCOA3Q9Y6Q9 1424 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 AKR1B10O60218 316 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 PTPN12Q05209 780 aaKnown RBP17.45■□□□□ 0.38
SHH-201ENST00000297261 CCDC178Q5BJE1 867 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 ATG3Q9NT62 314 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 SEPT11Q9NVA2 429 aaKnown RBP17.45■□□□□ 0.38
SHH-201ENST00000297261 A0A0D9SFI3 127 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 CHMP4BP1P59074 171 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 KANK3Q6NY19 840 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 CTSWP56202 376 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 PTH1RQ03431 593 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 MTX1Q13505 466 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 TPTE2Q6XPS3 522 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 OTUD6BQ8N6M0 293 aa17.45■□□□□ 0.38
SHH-201ENST00000297261 NBPF26B4DH59 902 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 TAF5LO75529 589 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 NBPF14Q5TI25 921 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 NBPF10Q6P3W6 841 aaKnown RBP17.44■□□□□ 0.38
SHH-201ENST00000297261 NBPF15Q8N660 670 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 CRKLP46109 303 aaKnown RBP17.44■□□□□ 0.38
SHH-201ENST00000297261 RRAGBQ5VZM2 374 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 DZIP1Q86YF9 867 aaKnown RBP17.44■□□□□ 0.38
SHH-201ENST00000297261 HSF2BPO75031 334 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 RXRAP19793 462 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 RASEFQ8IZ41 740 aa17.44■□□□□ 0.38
SHH-201ENST00000297261 PI4K2BQ8TCG2 481 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms