RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PRR20AP86496 221 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 CLINT1Q14677 625 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 Q5BKY6 102 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 FAM90A2PQ658T7 463 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 C16orf54Q6UWD8 224 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 GTSCR1Q86UQ5 136 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 ZNF709Q8N972 641 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 ST8SIA2Q92186 375 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 GPR82Q96P67 336 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 GGTLC1Q9BX51 225 aa12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 WDR61Q9GZS3 305 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 AURKAIP1Q9NWT8 199 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-219ENST00000599575 FXYD6-FXYD2A0A087WZ82 144 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 HMSDA8MTL9 139 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 C17orf112F2Z3M2 114 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 APOHP02749 345 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 ORM2P19652 201 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 FGF7P21781 194 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 OPCMLQ14982 345 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 TMEM182Q6ZP80 229 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 TCF24Q7RTU0 167 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 OR1L4Q8NGR5 311 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 SCGB1C1Q8TD33 95 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 PFDN5Q99471 154 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 FAM110AQ9BQ89 295 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 NPCDR1Q9BY65 106 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 HIGD1AQ9Y241 93 aa12.46□□□□□ -0.41
SHKBP1-219ENST00000599575 G3V3Q6 166 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 TAAR5O14804 337 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 GATA2P23769 480 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 DEFA6Q01524 100 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 GUCA2BQ16661 112 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 SAMD13Q5VXD3 122 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 TCTE3Q8IZS6 198 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 STPG3Q8N7X2 389 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 OR1B1Q8NGR6 318 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 GLMPQ8WWB7 406 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 PPP1R14BQ96C90 147 aa12.45□□□□□ -0.42
SHKBP1-219ENST00000599575 IGHV3-49A0A0A0MS15 119 aa12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 IZUMO1RA6ND01 250 aa12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 B2MP61769 119 aa12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 ZNF345Q14585 488 aa12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 ARL6Q9H0F7 186 aa12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 SEPSECSQ9HD40 501 aaKnown RBP12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 SLC39A9Q9NUM3 307 aa12.44□□□□□ -0.42
SHKBP1-219ENST00000599575 IGHV3OR16-13A0A075B7E8 117 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 IGHV3-74A0A0B4J1X5 117 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 RNF222A6NCQ9 220 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 ZNF98A6NK75 572 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 COX7A2P2O60397 106 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 OR5G3P0C626 314 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 SIGLEC15Q6ZMC9 328 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 OR8I2Q8N0Y5 310 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 GATAD1Q8WUU5 269 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 SHANK2-AS3Q9BTD1 123 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 SLC25A39Q9BZJ4 359 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 ARV1Q9H2C2 271 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 DNAJC4Q9NNZ3 241 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 PXMP4Q9Y6I8 212 aa12.43□□□□□ -0.42
SHKBP1-219ENST00000599575 MEOX2P50222 304 aa12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 RPL11P62913 178 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 ST6GAL2Q96JF0 529 aa12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 PRR25Q96S07 402 aa12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 SMIM3Q9BZL3 60 aa12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 MFFQ9GZY8 342 aa12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 TIMM9Q9Y5J7 89 aa12.42□□□□□ -0.42
SHKBP1-219ENST00000599575 SORL1Q92673 2214 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 BORCS7-ASMTA0A0B4J1R7 106 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 IGHV3-66A0A0C4DH42 116 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 A8MZ25 164 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 H3BRN7 92 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 DNASE2O00115 360 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 ARPC5O15511 151 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 RPL7P18124 248 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 GALR1P47211 349 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 C10orf113Q5VZT2 155 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 MIC13Q5XKP0 118 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 AKAP14Q86UN6 197 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 MS4A6AQ9H2W1 248 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 NRN1Q9NPD7 142 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 SMAD5-AS1Q9Y6J3 95 aa12.41□□□□□ -0.42
SHKBP1-219ENST00000599575 DNAH3Q8TD57 4116 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 A0A0D9SG52 128 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 K7EIL1 84 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 JTBO76095 146 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 CD81P60033 236 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 PATE2Q6UY27 113 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 LINC00305Q7Z4B0 112 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 Q8N1Y9 231 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 TMEM37Q8WXS4 190 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 DOK5Q9P104 306 aa12.4□□□□□ -0.42
SHKBP1-219ENST00000599575 KCNRGQ8N5I3 272 aa12.39□□□□□ -0.43
SHKBP1-219ENST00000599575 GNPNAT1Q96EK6 184 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-219ENST00000599575 PSMG3Q9BT73 122 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-219ENST00000599575 WFDC1Q9HC57 220 aa12.39□□□□□ -0.43
SHKBP1-219ENST00000599575 K7EQG2 157 aa12.38□□□□□ -0.43
SHKBP1-219ENST00000599575 C1QBP02746 253 aa12.38□□□□□ -0.43
SHKBP1-219ENST00000599575 SERF2P84101 59 aa12.38□□□□□ -0.43
SHKBP1-219ENST00000599575 BPIFA4PQ86YQ2 179 aa12.38□□□□□ -0.43
SHKBP1-219ENST00000599575 STXBP6Q8NFX7 210 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms