RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RPS23P62266 143 aaKnown RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 LSM3P62310 102 aaKnown RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 SNRPD2P62316 118 aaKnown RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 REG3AQ06141 175 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 JOSD1Q15040 202 aaPredicted RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 CENPWQ5EE01 88 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 ARL9Q6T311 187 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 TEX261Q6UWH6 196 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 TEX43Q6ZNM6 134 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 TMEM229BQ8NBD8 167 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 OR11G2Q8NGC1 345 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 OR51H1Q8NH63 302 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 OR5W2Q8NH69 310 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 FAM3DQ96BQ1 224 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 ADAT3Q96EY9 351 aaPredicted RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 TP53RKQ96S44 253 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 NDFIP1Q9BT67 221 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 SFXN3Q9BWM7 321 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 ZNF471Q9BX82 626 aaPredicted RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 SLC25A31Q9H0C2 315 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 CMC2Q9NRP2 79 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 TMEM100Q9NV29 134 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 LAMTOR2Q9Y2Q5 125 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 ZFHX2Q9C0A1 2572 aaPredicted RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 PCDH15Q96QU1 1955 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 VCANP13611 3396 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 IGLV4-60A0A075B6I1 120 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 IGLV3-32A0A0A0MS00 114 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 TMEM269A0A1B0GVZ9 245 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 DUXBA0A1W2PPF3 345 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 TMEM72A0PK05 275 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 RIIAD1A6NNX1 92 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 KNCNA6PVL3 124 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 ZNF850A8MQ14 1090 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 J3QRE1 110 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 M0R2Z0 102 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 GNG7O60262 68 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 NDUFB2O95178 105 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 BGLAPP02818 100 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 CSN2P05814 226 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 ASAH2BP0C7U1 165 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 CTLA4P16410 223 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 CACNG7P62955 275 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 HIST1H1AQ02539 215 aaPredicted RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 FOXF1Q12946 379 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 DEFB116Q30KQ4 102 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 C12orf74Q32Q52 190 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 ZNF791Q3KP31 576 aaPredicted RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 HES3Q5TGS1 186 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 NXNL2Q5VZ03 156 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 Q6ZRU5 148 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 OR10AD1Q8NGE0 317 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 OR4K13Q8NH42 304 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 ZNF563Q8TA94 476 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 ERMAPQ96PL5 475 aaPredicted RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 TSPAN32Q96QS1 320 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 GPX7Q96SL4 187 aaPredicted RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 MGLLQ99685 303 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 OR2H1Q9GZK4 316 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 CST9LQ9H4G1 147 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 TAF9BQ9HBM6 251 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 MED11Q9P086 117 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 BAIAP2Q9UQB8 552 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 IER3IP1Q9Y5U9 82 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 CHCHD2Q9Y6H1 151 aaPredicted RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 PHF3Q92576 2039 aaKnown RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 SNRNP200O75643 2136 aaKnown RBP2.96□□□□□ -1.94
NUP88-213ENST00000576862 HEATR5BQ9P2D3 2071 aa2.96□□□□□ -1.94
NUP88-213ENST00000576862 COL6A3P12111 3177 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 TRBV19A0A075B6N1 114 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 TMED7-TICAM2A0A0A6YYA0 188 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 A0A0G2JMM0 328 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 SPAARA0A1B0GVQ0 90 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 A0A1W2PPB8 328 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 A0A1W2PRS3 328 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 IRGMA1A4Y4 181 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 C5orf63A6NC05 138 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 FABP5P3A8MUU1 101 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 KIR3DP1A8MWS1 328 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 C9JAW5 83 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 F5H5P2 479 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 ANGPTL7O43827 346 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 IGLV2-23P01705 113 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 HLA-DRB1P01911 266 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 GYPBP06028 91 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 CD14P08571 375 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 SMIM17P0DL12 118 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 CCL3P10147 92 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 HIST1H1BP16401 226 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 ZNF823P16415 610 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 FGF7P21781 194 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 OR10J1P30954 320 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 GABRA2P47869 451 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 P2RX1P51575 399 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 RPS25P62851 125 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 MEF2CQ06413 473 aaPredicted RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 RPL18Q07020 188 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 MOBPQ13875 183 aa2.95□□□□□ -1.94
NUP88-213ENST00000576862 ENDOGQ14249 297 aaKnown RBP2.95□□□□□ -1.94
NUP88-213ENST00000576862 FBXL19-AS1Q494R0 122 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms