RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 C17orf98A8MV24 154 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 CTSBP07858 339 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 TEN1Q86WV5 123 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 OR13A1Q8NGR1 328 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 APC2O95996 2303 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 HGFACQ04756 655 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 CALYQ9NYX4 217 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 HLA-DMBP28068 263 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 A0A1W2PPI3 338 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 M0R381 172 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 EFEMP2O95967 443 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 ATP5G1P05496 136 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 ATP5G2Q06055 141 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 TCF15Q12870 199 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 SLC25A53Q5H9E4 307 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 DUX5Q96PT3 197 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 DCTN5Q9BTE1 182 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 PSG8Q9UQ74 426 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 HAX1O00165 279 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 TREML4Q6UXN2 200 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 LCNL1Q6ZST4 164 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 IMMP1LQ96LU5 166 aa10.97□□□□□ -0.65
USP40-208ENST00000450966 NPFFO15130 113 aa10.96□□□□□ -0.65
USP40-208ENST00000450966 MRPL55Q7Z7F7 128 aaKnown RBP10.96□□□□□ -0.65
USP40-208ENST00000450966 NTN5Q8WTR8 489 aaPredicted RBP10.96□□□□□ -0.65
USP40-208ENST00000450966 SPANXB1Q9NS25 103 aaPredicted RBP10.96□□□□□ -0.65
USP40-208ENST00000450966 PSME4Q14997 1843 aa10.96□□□□□ -0.65
USP40-208ENST00000450966 MYMXA0A1B0GTQ4 84 aa10.96□□□□□ -0.65
USP40-208ENST00000450966 FAM166AQ6J272 317 aa10.96□□□□□ -0.65
USP40-208ENST00000450966 IGKV3D-11A0A0A0MRZ8 115 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 SOCS3O14543 225 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 PF4P02776 101 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 PPIFP30405 207 aaKnown RBP10.96□□□□□ -0.66
USP40-208ENST00000450966 PTH2Q96A98 100 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 K7ERJ3 54 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 ZNF826PQ6ZT77 177 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 PRO1854Q9UHT4 67 aa10.96□□□□□ -0.66
USP40-208ENST00000450966 IGHV3OR16-12A0A075B7B8 117 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 ZNF138P52744 262 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 ATP1A1-AS1Q5TC04 95 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 FAM168AQ92567 244 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 A0A0A6YYD4 124 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 IGKV1D-13A0A0B4J2D9 117 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 IGLL5B9A064 214 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 IGKV1-13P0DP09 117 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 CENPVQ7Z7K6 275 aaPredicted RBP10.95□□□□□ -0.66
USP40-208ENST00000450966 TMEM54Q969K7 222 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 RALGAPA2Q2PPJ7 1873 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 LIME1Q9H400 295 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 TRAV13-1A0A0B4J241 112 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 FAM74A4Q5TZK3 123 aa10.95□□□□□ -0.66
USP40-208ENST00000450966 KLF14Q8TD94 323 aaPredicted RBP10.95□□□□□ -0.66
USP40-208ENST00000450966 FAM159AQ6UWV7 190 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 PRSS57Q6UWY2 283 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 LINC00114Q6XXX2 140 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 HAPLN4Q86UW8 402 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 TMEM158Q8WZ71 300 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 C20orf204Q6ZNR8 217 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 TMEM243Q9BU79 118 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 PTPRFP10586 1907 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 LY6EQ16553 131 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 OSR1Q8TAX0 266 aaPredicted RBP10.94□□□□□ -0.66
USP40-208ENST00000450966 TRAV40A0A0B4J280 105 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 FGF6P10767 208 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 CFPP27918 469 aa10.94□□□□□ -0.66
USP40-208ENST00000450966 TUBGCP6Q96RT7 1819 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 CGB1A6NKQ9 187 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 EEF1AKMT3Q96AZ1 226 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 TNFRSF18Q9Y5U5 241 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 LINC00271P0C7V0 271 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 GATA2P23769 480 aaPredicted RBP10.93□□□□□ -0.66
USP40-208ENST00000450966 WFDC2Q14508 124 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 PRADC1Q9BSG0 188 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 PYYP10082 97 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 SRD5A1P18405 259 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 CHCHD2Q9Y6H1 151 aaPredicted RBP10.93□□□□□ -0.66
USP40-208ENST00000450966 SIPA1L1O43166 1804 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 WNT2P09544 360 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 CCL1P22362 96 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 KLF5Q13887 457 aaPredicted RBP10.93□□□□□ -0.66
USP40-208ENST00000450966 TDRG1Q3Y452 100 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 FAM90A1Q86YD7 464 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 IGKV1D-8A0A087WSZ0 117 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 TCRBV4S1A1TA0A5B7 111 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 CRPP02741 224 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 PHLDA1Q8WV24 401 aaPredicted RBP10.93□□□□□ -0.66
USP40-208ENST00000450966 SCRT2Q9NQ03 307 aa10.93□□□□□ -0.66
USP40-208ENST00000450966 MIA3Q5JRA6 1907 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 FAM236AA0A1B0GUQ0 79 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 FAM236BA0A1B0GV22 79 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 NDUFV3P56181 108 aaKnown RBP10.92□□□□□ -0.66
USP40-208ENST00000450966 SMIM27A0A1W2PRY6 76 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 DPH3Q96FX2 82 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 V9GYV3 84 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 SNRPD3P62318 126 aaKnown RBP10.92□□□□□ -0.66
USP40-208ENST00000450966 NCR2O95944 276 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 C5orf64Q2M2E5 130 aa10.92□□□□□ -0.66
USP40-208ENST00000450966 C15orf61A6NNL5 157 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 NPPCP23582 126 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 RCHY1Q96PM5 261 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms