RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 ALKBH6Q3KRA9 238 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 WFDC8Q8IUA0 241 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 ZFC3H1O60293 1989 aaKnown RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 IGKV1-6A0A0C4DH72 117 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 SAA1P0DJI8 122 aaPredicted RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 KIR3DS1Q14943 382 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 SSBP3Q9BWW4 388 aaPredicted RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 TRAV25A0A0B4J276 109 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 CNTFRP26992 372 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 TRPM6Q9BX84 2022 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 IGKV1D-17A0A075B6S4 117 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 DPH3P1Q9H4G8 78 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 B4DSR2 109 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 EP300Q09472 2414 aaPredicted RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 RBMY1BA6NDE4 496 aaKnown RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 RBMY1EA6NEQ0 496 aaKnown RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 RBMY1DP0C7P1 496 aaKnown RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 RBMY1A1P0DJD3 496 aaKnown RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 RBMY1CP0DJD4 496 aa4□□□□□ -1.77
PCDH9-201ENST00000377861 C16orf47Q6ZP98 133 aaPredicted RBP4□□□□□ -1.77
PCDH9-201ENST00000377861 MYMXA0A1B0GTQ4 84 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 GUSBP1Q15486 140 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 PLA2G3Q9NZ20 509 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 PPDPFQ9H3Y8 114 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 MAJINQ3KP22 176 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 ATXN8Q156A1 80 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 ZNRF1Q8ND25 227 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 H3BMM0 161 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 ITLN1Q8WWA0 313 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 H7C423 109 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 Q71RC1 249 aaPredicted RBP3.99□□□□□ -1.77
PCDH9-201ENST00000377861 DNAL4O96015 105 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 ZNF329Q86UD4 541 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 C9JQL5 133 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 CD59P13987 128 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 IGFBP2P18065 325 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 PRR25Q96S07 402 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 VKORC1L1Q8N0U8 176 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 LGALS1P09382 135 aaKnown RBP3.99□□□□□ -1.77
PCDH9-201ENST00000377861 RAX2Q96IS3 184 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 A0A1B0GW54 56 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 SCO2A0A1W2PP80 73 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 H3BMG7 143 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 PRKNO60260 465 aaPredicted RBP3.99□□□□□ -1.77
PCDH9-201ENST00000377861 WISP2O76076 250 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 PSMB11A5LHX3 300 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 UTF1Q5T230 341 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 EBI3Q14213 229 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 SNHG12Q9BXW3 62 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 PRO1854Q9UHT4 67 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 TRAV4A0A0B4J268 109 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 TRIP11Q15643 1979 aa3.99□□□□□ -1.77
PCDH9-201ENST00000377861 CSTL1Q9H114 145 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 IGKV1D-8A0A087WSZ0 117 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 A0A1B0GWB2 263 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 SMAD7O15105 426 aaKnown RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 VHLLQ6RSH7 139 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 NPYP01303 97 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 SUMO2P61956 95 aaKnown RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 DAZAP2Q15038 168 aaPredicted RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 U3KQK5 164 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 ZDHHC16Q969W1 377 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 TMEM160Q9NX00 188 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 ADMP35318 185 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 TNS1Q9HBL0 1735 aaKnown RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 CST9LQ9H4G1 147 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 TRPT1Q86TN4 253 aaKnown RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 KLHDC3Q9BQ90 382 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 ARFGEF1Q9Y6D6 1849 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 FOCADQ5VW36 1801 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 C9orf47Q6ZRZ4 202 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 WDR90Q96KV7 1748 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 ALPK2Q86TB3 2170 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 ZNF837Q96EG3 531 aaPredicted RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 F8VRH5 84 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 FAM110DQ8TAY7 271 aaPredicted RBP3.98□□□□□ -1.77
PCDH9-201ENST00000377861 TMEM11P17152 192 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 IGHV1-18A0A0C4DH31 117 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 STPG4Q8N801 248 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 ZNF479Q96JC4 524 aa3.98□□□□□ -1.77
PCDH9-201ENST00000377861 SLC25A20O43772 301 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 MIR17HGQ75NE6 70 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 TP73-AS1Q9UF72 201 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 COL4A4P53420 1690 aaPredicted RBP3.97□□□□□ -1.77
PCDH9-201ENST00000377861 FAM240AA0A1B0GVK7 77 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 HS3ST6Q96QI5 342 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 LOC107984156A0A0G2JMH3 177 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 ELANEP08246 267 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 IGLC1P0CG04 106 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 ARL17AQ8IVW1 177 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 IGHV1-46P01743 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 RP1P56715 2156 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GAGE12JA6NER3 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GAGE7O76087 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GAGE12FP0CL80 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GAGE12GP0CL81 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GAGE12IP0CL82 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GAGE4Q13068 117 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 TIMM17AQ99595 171 aa3.97□□□□□ -1.77
PCDH9-201ENST00000377861 GPHB5Q86YW7 130 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms