RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 A6NHS1 94 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 JTBO76095 146 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 CFDP00746 253 aaPredicted RBP13.37□□□□□ -0.27
CLN3-202ENST00000355477 MBPP02686 304 aaPredicted RBP13.37□□□□□ -0.27
CLN3-202ENST00000355477 METTL15P1P0C7V9 234 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 DEFB1P60022 68 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 OR8I2Q8N0Y5 310 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 CSNK1G2-AS1Q8NCQ2 148 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 CLEC5AQ9NY25 188 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 FBXL17Q9UF56 701 aa13.37□□□□□ -0.27
CLN3-202ENST00000355477 HYDINQ4G0P3 5121 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 SMCO3A2RU48 225 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 H3BMM0 161 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 SOCS3O14543 225 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 ORM2P19652 201 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 RRAS2P62070 204 aaPredicted RBP13.36□□□□□ -0.27
CLN3-202ENST00000355477 GDF5OSQ5U4N7 250 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 CEMP1Q6PRD7 247 aaPredicted RBP13.36□□□□□ -0.27
CLN3-202ENST00000355477 LINC00299Q6ZSB3 139 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 BPIFCQ8NFQ6 507 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 C17orf77Q96MU5 243 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 C11orf68Q9H3H3 251 aaKnown RBP13.36□□□□□ -0.27
CLN3-202ENST00000355477 TBC1D24Q9ULP9 559 aa13.36□□□□□ -0.27
CLN3-202ENST00000355477 H2AFB2P0C5Z0 115 aa13.35□□□□□ -0.27
CLN3-202ENST00000355477 NANOS2P60321 138 aaKnown RBP13.35□□□□□ -0.27
CLN3-202ENST00000355477 CYP2G1PQ6ZSU1 146 aa13.35□□□□□ -0.27
CLN3-202ENST00000355477 ZNF431Q8TF32 576 aaPredicted RBP13.35□□□□□ -0.27
CLN3-202ENST00000355477 LINC00052Q96N35 136 aa13.35□□□□□ -0.27
CLN3-202ENST00000355477 C7orf66A4D0T2 115 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 NUPR2A6NF83 97 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 ZNF98A6NK75 572 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 TSC22D2O75157 780 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 HLA-DRB4P13762 266 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 TAS2R30P59541 319 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 DLK1P80370 383 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 ARL16Q0P5N6 197 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 TMEM41BQ5BJD5 291 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 Q8NAQ8 132 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 OR1B1Q8NGR6 318 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 S100ZQ8WXG8 99 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 SLC25A32Q9H2D1 315 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 SLC25A22Q9H936 323 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 SLC45A2Q9UMX9 530 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 HLA-DRB4X5D2U9 266 aa13.34□□□□□ -0.27
CLN3-202ENST00000355477 FAM240BA0A1B0GVZ2 78 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 ZNF705EA8MWA4 302 aaPredicted RBP13.33□□□□□ -0.28
CLN3-202ENST00000355477 FAM25EA8MYX2 175 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 IL5P05113 134 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 RBMY1A1P0DJD3 496 aaKnown RBP13.33□□□□□ -0.28
CLN3-202ENST00000355477 RBMY1CP0DJD4 496 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 ID1P41134 155 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 RBMY1FQ15415 496 aaKnown RBP13.33□□□□□ -0.28
CLN3-202ENST00000355477 C12orf45Q8N5I9 185 aaPredicted RBP13.33□□□□□ -0.28
CLN3-202ENST00000355477 C11orf45Q8TAV5 145 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 PHLDA1Q8WV24 401 aaPredicted RBP13.33□□□□□ -0.28
CLN3-202ENST00000355477 DOK5Q9P104 306 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 X6R8D5 127 aa13.33□□□□□ -0.28
CLN3-202ENST00000355477 IGHV4-28A0A0C4DH34 117 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 PSMB3P49720 205 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 ZNF846Q147U1 533 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 OR10P1Q8NGE3 313 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 C20orf173Q96LM9 149 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 RSG1Q9BU20 258 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 TMEM147Q9BVK8 224 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 SCRT1Q9BWW7 348 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 SAV1Q9H4B6 383 aaPredicted RBP13.32□□□□□ -0.28
CLN3-202ENST00000355477 NPVFQ9HCQ7 196 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 XCL2Q9UBD3 114 aa13.32□□□□□ -0.28
CLN3-202ENST00000355477 C5orf51A6NDU8 294 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 FNDC10F2Z333 226 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 K7EPK0 472 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 ISLRO14498 428 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 IGKV3-20P01619 116 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 GALR1P47211 349 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 ASAH1Q13510 395 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 MZT2BQ6NZ67 158 aa13.31□□□□□ -0.28
CLN3-202ENST00000355477 LSM5Q9Y4Y9 91 aaKnown RBP13.31□□□□□ -0.28
CLN3-202ENST00000355477 F6UB75 175 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 H3BRN7 92 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 LINC00869P0C866 280 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 PLP1P60201 277 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 NUTF2P61970 127 aaKnown RBP13.3□□□□□ -0.28
CLN3-202ENST00000355477 TEPPQ6URK8 271 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 FOXI2Q6ZQN5 318 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 LINC00476Q8WZB0 136 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 C2orf50Q96LR7 162 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 SLC25A39Q9BZJ4 359 aaPredicted RBP13.3□□□□□ -0.28
CLN3-202ENST00000355477 C11orf1Q9H5F2 150 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 MGAT4CQ9UBM8 478 aa13.3□□□□□ -0.28
CLN3-202ENST00000355477 KLK5Q9Y337 293 aaPredicted RBP13.3□□□□□ -0.28
CLN3-202ENST00000355477 ELOA3CA0A087WX78 387 aaPredicted RBP13.29□□□□□ -0.28
CLN3-202ENST00000355477 HYPMO75409 117 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 DEDDO75618 318 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 MIFP14174 115 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 FXYD7P58549 80 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 SELENOTP62341 195 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 IFITM3Q01628 133 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 SLC38A11Q08AI6 406 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 PATE2Q6UY27 113 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms