RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	PRSS54	Q6PEW0	395 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	OR51G1	Q8NGK1	321 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	FCGR1B	Q92637	280 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	VCX	Q9H320	206 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	TXNL4B	Q9NX01	149 aa	Known RBP	11.19	□□□□□ -0.62
CLK3-223	ENST00000568488		A0A0J9YX75	114 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	EBAG9	O00559	213 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	AZU1	P20160	251 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	HSPA13	P48723	471 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	AKR1C2	P52895	323 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	PAX9	P55771	341 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	ERVFC1-1	P60608	527 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	HAMP	P81172	84 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	MXD1	Q05195	221 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	ESRG	Q1W209	222 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	TMEM69	Q5SWH9	247 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	IDNK	Q5T6J7	187 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	GNPNAT1	Q96EK6	184 aa	Predicted RBP	11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	PBDC1	Q9BVG4	233 aa		11.18	□□□□□ -0.62
CLK3-223	ENST00000568488	IGKV1-5	P01602	117 aa		11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	TAS2R46	P59540	309 aa		11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	TSPAN5	P62079	268 aa		11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	TBCE	Q15813	527 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	GPR146	Q96CH1	333 aa		11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	ZNF503	Q96F45	646 aa		11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	UPK3B	Q9BT76	320 aa		11.17	□□□□□ -0.62
CLK3-223	ENST00000568488	TRAV26-1	A0A087WT03	109 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488		A0A0J9YY99	117 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	TOMM40	O96008	361 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	CLEC2L	P0C7M8	214 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	PSG1	P11464	419 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	SLC25A4	P12235	298 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	HLA-DMA	P28067	261 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	SPINK13	Q1W4C9	94 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	RNASE12	Q5GAN4	147 aa	Known RBP	11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	SYT8	Q8NBV8	401 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	NPIPB3	Q92617	1050 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	ACY3	Q96HD9	319 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	RPRM	Q9NS64	109 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	DOK5	Q9P104	306 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488	PFDN2	Q9UHV9	154 aa		11.16	□□□□□ -0.62
CLK3-223	ENST00000568488		M0R2Z0	102 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	SOCS3	O14543	225 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	INS	P01308	110 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	HTN1	P15515	57 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	PSMB9	P28065	219 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	SDC2	P34741	201 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	HRH1	P35367	487 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	HTR2B	P41595	481 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	BSX	Q3C1V8	233 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	SERTAD4-AS1	Q5TG53	156 aa		11.15	□□□□□ -0.62
CLK3-223	ENST00000568488		Q6ZRN7	208 aa	Predicted RBP	11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	MRPS16	Q9Y3D3	137 aa	Known RBP	11.15	□□□□□ -0.62
CLK3-223	ENST00000568488	PLAC8L1	A1L4L8	177 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	ISLR	O14498	428 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	TSPO	P30536	169 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	NUP62	P37198	522 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	SCAND1	P57086	179 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	B2M	P61769	119 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	AMTN	Q6UX39	209 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	RXFP4	Q8TDU9	374 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	RNF125	Q96EQ8	232 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	LINC01587	Q99440	93 aa		11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	HEYL	Q9NQ87	328 aa	Predicted RBP	11.14	□□□□□ -0.63
CLK3-223	ENST00000568488	CRX	O43186	299 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	ATG12	O94817	140 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	NXPH3	O95157	252 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488		P0C879	139 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	M6PR	P20645	277 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	RNASE11	Q8TAA1	199 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	RNASEH2C	Q8TDP1	164 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	C16orf92	Q96LL3	132 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	C20orf173	Q96LM9	149 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	ANAPC10	Q9UM13	185 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	SSR3	Q9UNL2	185 aa		11.13	□□□□□ -0.63
CLK3-223	ENST00000568488	DNAH10OS	P0CZ25	163 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	NAT1	P18440	290 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	ELK1	P19419	428 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	GCSH	P23434	173 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	ETFRF1	Q6IPR1	90 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	LYSMD2	Q8IV50	215 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	BAP18	Q8IXM2	172 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	PPP1R14B	Q96C90	147 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	RRNAD1	Q96FB5	475 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	S100A16	Q96FQ6	103 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	NOP10	Q9NPE3	64 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	TNFRSF18	Q9Y5U5	241 aa		11.12	□□□□□ -0.63
CLK3-223	ENST00000568488	TRAV12-2	A0A075B6T6	113 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	PGAM2	P15259	253 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	CNN1	P51911	297 aa	Known RBP	11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	SUPT4H1	P63272	117 aa	Known RBP	11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	TRIM16L	Q309B1	348 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	C2orf83	Q53S99	150 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	GPR141	Q7Z602	305 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	OR8I2	Q8N0Y5	310 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	OR11H7	Q8NGC8	314 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488	TP53RK	Q96S44	253 aa		11.11	□□□□□ -0.63
CLK3-223	ENST00000568488		A8MTW9	85 aa		11.1	□□□□□ -0.63
CLK3-223	ENST00000568488	KRTAP29-1	A8MX34	341 aa	Predicted RBP	11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms