RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SHANK2-AS3Q9BTD1 123 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 TTTY10Q9BZA0 68 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 FAM60AQ9NP50 221 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM38BQ9NVV0 291 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 OR52A1Q9UKL2 312 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 C14orf166Q9Y224 244 aaKnown RBP2.43□□□□□ -2.02
LINC00560-201ENST00000564593 A0A0C4DFX4 3053 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 CACNA1GO43497 2377 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 IGLV3-32A0A0A0MS00 114 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 LOC102725191A0A1B0GVB3 256 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 MCRIP1C9JLW8 97 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 D6RAR5 112 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 UPK2O00526 184 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 IFNA21P01568 189 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 OR4E1P0C645 316 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 ZNF35P13682 527 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 CXCL3P19876 107 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 ZNF93P35789 620 aaPredicted RBP2.42□□□□□ -2.02
LINC00560-201ENST00000564593 GABRA4P48169 554 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 B2MP61769 119 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 LSM6P62312 80 aaKnown RBP2.42□□□□□ -2.02
LINC00560-201ENST00000564593 DCDP81605 110 aaKnown RBP2.42□□□□□ -2.02
LINC00560-201ENST00000564593 RSU1Q15404 277 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 CEACAM16Q2WEN9 425 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 BSXQ3C1V8 233 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 LGALSLQ3ZCW2 172 aaPredicted RBP2.42□□□□□ -2.02
LINC00560-201ENST00000564593 SCGB2B2Q4G0G5 96 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM128Q5BJH2 165 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM31Q5JXX7 168 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 TRAPPC6BQ86SZ2 158 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 SVBPQ8N300 66 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 KCNRGQ8N5I3 272 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 LINC00304Q8N9R0 145 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 PXT1Q8NFP0 134 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 OR1M1Q8NGA1 313 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 OR4K17Q8NGC6 315 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 OR51D1Q8NGF3 324 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 STOML3Q8TAV4 291 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 RNASEH2CQ8TDP1 164 aaKnown RBP2.42□□□□□ -2.02
LINC00560-201ENST00000564593 GPR119Q8TDV5 335 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 RNF133Q8WVZ7 376 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 PATE1Q8WXA2 126 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 SPTSSAQ969W0 71 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 SLAMF6Q96DU3 332 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 GPER1Q99527 375 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 NMES1Q9C002 83 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 CHST6Q9GZX3 395 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 TAS2R4Q9NYW5 299 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 SLC22A13Q9Y226 551 aa2.42□□□□□ -2.02
LINC00560-201ENST00000564593 EML6Q6ZMW3 1958 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 MYO7BQ6PIF6 2116 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 BORCS7-ASMTA0A0B4J1R7 106 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 OR5H14A6NHG9 310 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 A6NIN4 97 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 H7C1C5 153 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 PIN1P1O15428 100 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 COX7A2P2O60397 106 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 FADS1O60427 444 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 FSTL3O95633 263 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 CLPSP04118 112 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 CD3DP04234 171 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 HIST1H1DP16402 221 aaKnown RBP2.41□□□□□ -2.02
LINC00560-201ENST00000564593 CTLA4P16410 223 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 CCL1P22362 96 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 CLDN12P56749 244 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 PCBD1P61457 104 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 LCN6P62502 163 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 DHRS2Q13268 280 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 DEFB133Q30KQ1 61 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 ZFAND6Q6FIF0 208 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 DGAT2L6Q6ZPD8 337 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 FA2HQ7L5A8 372 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 SLC36A1Q7Z2H8 476 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 DPPA2Q7Z7J5 298 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 MRPL52Q86TS9 123 aaKnown RBP2.41□□□□□ -2.02
LINC00560-201ENST00000564593 LINC00596Q86U02 117 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 MARCH3Q86UD3 253 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 NAA40Q86UY6 237 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 ZFP62Q8NB50 900 aaPredicted RBP2.41□□□□□ -2.02
LINC00560-201ENST00000564593 LFNGQ8NES3 379 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 OR51A2Q8NGJ7 313 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 OR10K1Q8NGX5 313 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 OR8S1Q8NH09 359 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 OR4K15Q8NH41 348 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 TERB2Q8NHR7 220 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 LHFPL5Q8TAF8 219 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 BLNKQ8WV28 456 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 AQP3Q92482 292 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 TSLPQ969D9 159 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 MRPS24Q96EL2 167 aaKnown RBP2.41□□□□□ -2.02
LINC00560-201ENST00000564593 ZNF471Q9BX82 626 aaPredicted RBP2.41□□□□□ -2.02
LINC00560-201ENST00000564593 TCEAL2Q9H3H9 227 aaPredicted RBP2.41□□□□□ -2.02
LINC00560-201ENST00000564593 VSIRQ9H7M9 311 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 PLEKHJ1Q9NW61 149 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 ATPIF1Q9UII2 106 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 PCDH15Q96QU1 1955 aa2.41□□□□□ -2.02
LINC00560-201ENST00000564593 C9orf170A2RU37 121 aa2.4□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM235A6NFC5 223 aa2.4□□□□□ -2.02
LINC00560-201ENST00000564593 FTCDNL1E5RQL4 147 aa2.4□□□□□ -2.02
LINC00560-201ENST00000564593 CDIPTO14735 213 aa2.4□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms